Variant report

Variant	rs9595739
Chromosome Location	chr13:48138067-48138068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2897405	1.00[ASN][1000 genomes]
rs59333988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488884	1.00[ASN][1000 genomes]
rs7981407	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002560	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534687	1.00[ASN][1000 genomes]
rs9534688	1.00[ASN][1000 genomes]
rs9591081	1.00[ASN][1000 genomes]
rs9591082	1.00[ASN][1000 genomes]
rs9595743	1.00[ASN][1000 genomes]
rs9595748	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv900065	chr13:48106733-48215874	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48137800-48138600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:48137800-48138600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:48137800-48138800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:48137800-48138800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:48137800-48138800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:48137800-48138800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:48137800-48138800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:48138000-48138400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr13:48138000-48138800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:48138000-48138800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:48138000-48138800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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