Variant report

Variant	rs9595892
Chromosome Location	chr13:48914067-48914068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10162207	1.00[EUR][1000 genomes]
rs60546811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60646582	1.00[EUR][1000 genomes]
rs7321965	1.00[EUR][1000 genomes]
rs7334574	1.00[EUR][1000 genomes]
rs7337739	1.00[EUR][1000 genomes]
rs73490879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316400	1.00[EUR][1000 genomes]
rs9591164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591179	1.00[EUR][1000 genomes]
rs9595906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9805455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039312	chr13:48898950-48925357	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038705	chr13:48899219-48922327	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1042504	chr13:48911264-48925357	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas
2	chr13:48892600-48927800	Weak transcription	HUVEC	blood vessel
3	chr13:48894600-48919200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:48895200-48916800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr13:48895200-48923600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:48895200-48924600	Weak transcription	HSMMtube	muscle
7	chr13:48895400-48924800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:48895800-48919600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr13:48895800-48920400	Weak transcription	Right Ventricle	heart
10	chr13:48895800-48926600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr13:48896000-48919800	Weak transcription	Primary T cells from cord blood	blood
12	chr13:48897000-48917000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr13:48903400-48924400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:48908400-48922200	Weak transcription	Liver	Liver
15	chr13:48908400-48944800	Weak transcription	Small Intestine	intestine
16	chr13:48908800-48917000	Weak transcription	NHDF-Ad	bronchial
17	chr13:48908800-48919200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:48908800-48919600	Weak transcription	HMEC	breast
19	chr13:48908800-48927600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:48909000-48923600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:48909000-48924400	Weak transcription	Osteobl	bone
22	chr13:48909000-48972200	Weak transcription	NHEK	skin
23	chr13:48909200-48916800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr13:48911600-48918000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:48911800-48919600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr13:48911800-48948400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr13:48912400-48914400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:48912600-48914200	ZNF genes & repeats	Dnd41	blood
30	chr13:48912600-48914400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:48912800-48914400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr13:48912800-48917600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:48913000-48914400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:48913200-48919400	Weak transcription	Brain Anterior Caudate	brain
35	chr13:48913200-48924800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr13:48913400-48914400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:48913400-48918000	Weak transcription	Fetal Muscle Leg	muscle
38	chr13:48913400-48923400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:48913400-48925800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:48913400-48944200	Weak transcription	Aorta	Aorta
41	chr13:48913600-48914400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr13:48913600-48914400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr13:48913600-48914400	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr13:48913600-48918400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr13:48913600-48918400	Weak transcription	Left Ventricle	heart
46	chr13:48913800-48914400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr13:48913800-48914400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:48913800-48914400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr13:48913800-48914400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr13:48913800-48914400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links