Variant report

Variant	rs9595959
Chromosome Location	chr13:49252093-49252094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1080084	1.00[EUR][1000 genomes]
rs11843756	1.00[ASN][1000 genomes]
rs17072059	1.00[ASN][1000 genomes]
rs61183001	1.00[ASN][1000 genomes]
rs9591193	1.00[ASN][1000 genomes]
rs9591199	1.00[ASN][1000 genomes]
rs9591201	1.00[ASN][1000 genomes]
rs9595941	1.00[EUR][1000 genomes]
rs9595942	1.00[EUR][1000 genomes]
rs9595969	1.00[ASN][1000 genomes]
rs9595973	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49248200-49252800	Enhancers	Dnd41	blood
2	chr13:49250800-49252200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:49251000-49257200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr13:49251200-49252800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr13:49251400-49254600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:49251600-49252800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr13:49251800-49252200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:49251800-49253400	Enhancers	Spleen	Spleen
9	chr13:49251800-49256000	Enhancers	Placenta	Placenta
10	chr13:49251800-49281600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr13:49252000-49252200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:49252000-49252400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr13:49252000-49262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:49252000-49283600	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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