Variant report

Variant	rs9596546
Chromosome Location	chr13:52186610-52186611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52186025..52188338-chr13:52190081..52191689,2	MCF-7	breast:
2	chr13:52156942..52159573-chr13:52185500..52188025,2	K562	blood:
3	chr13:52156622..52158442-chr13:52184579..52187000,2	K562	blood:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10467509	1.00[AMR][1000 genomes]
rs9316549	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9316554	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9568667	1.00[YRI][hapmap]
rs9591413	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9596540	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9596542	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9596560	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
2	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:52169800-52187000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:52169800-52188600	Weak transcription	Esophagus	oesophagus
5	chr13:52169800-52188600	Weak transcription	Gastric	stomach
6	chr13:52173600-52190400	Weak transcription	Fetal Heart	heart
7	chr13:52174200-52188200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr13:52174400-52188400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr13:52175000-52187200	Weak transcription	Spleen	Spleen
10	chr13:52175000-52188600	Weak transcription	Fetal Muscle Leg	muscle
11	chr13:52176000-52188600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:52176600-52188400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:52176600-52188400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:52177000-52188400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:52178200-52188600	Weak transcription	Left Ventricle	heart
16	chr13:52178200-52188600	Weak transcription	Lung	lung
17	chr13:52179400-52187200	Weak transcription	Pancreas	Pancrea
18	chr13:52179600-52187200	Weak transcription	Right Atrium	heart
19	chr13:52180000-52187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:52180600-52192000	Weak transcription	A549	lung
21	chr13:52181400-52188400	Enhancers	Primary B cells from peripheral blood	blood
22	chr13:52181600-52188600	Weak transcription	Thymus	Thymus
23	chr13:52181800-52186800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr13:52182200-52187200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:52182200-52187800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:52182200-52187800	Weak transcription	NHEK	skin
27	chr13:52182200-52188400	Weak transcription	Primary T cells from cord blood	blood
28	chr13:52182200-52188600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:52182200-52188600	Weak transcription	Aorta	Aorta
30	chr13:52182200-52188600	Weak transcription	Fetal Brain Female	brain
31	chr13:52182200-52194400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:52182400-52188600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:52182400-52191600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr13:52183200-52187200	Weak transcription	Ovary	ovary
35	chr13:52183200-52188400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr13:52183400-52186800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr13:52183400-52186800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:52183400-52187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:52183400-52188400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:52183400-52188600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr13:52183400-52188600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr13:52183600-52186800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr13:52183600-52187000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:52183600-52188200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr13:52183600-52188400	Weak transcription	Brain Angular Gyrus	brain
46	chr13:52184000-52187200	Weak transcription	GM12878-XiMat	blood
47	chr13:52184200-52188400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr13:52184200-52188400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:52184200-52188400	Weak transcription	Brain Substantia Nigra	brain
50	chr13:52184200-52188600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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