Variant report

Variant	rs9596702
Chromosome Location	chr13:53445552-53445553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1407760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17410833	1.00[YRI][hapmap]
rs17614236	1.00[YRI][hapmap]
rs5030684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030685	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716409	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74088314	1.00[ASN][1000 genomes]
rs74088315	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7490015	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536263	1.00[YRI][hapmap]
rs9591470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591471	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596691	1.00[ASN][1000 genomes]
rs9596692	1.00[ASN][1000 genomes]
rs9596695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596699	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596701	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596703	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596706	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596708	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv455889	chr13:53419139-53466127	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv561661	chr13:53419139-53466127	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv900090	chr13:53429453-53495715	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53441200-53445800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53441600-53445600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53442000-53446600	Enhancers	Fetal Muscle Leg	muscle
4	chr13:53442000-53447000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:53442400-53446400	Enhancers	Dnd41	blood
6	chr13:53443400-53448600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:53445000-53446200	Enhancers	Fetal Muscle Trunk	muscle
8	chr13:53445200-53445800	Enhancers	HSMMtube	muscle
9	chr13:53445400-53448600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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