Variant report

Variant	rs9596846
Chromosome Location	chr13:54320170-54320171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10161977	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458265	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17088891	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17088941	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17088998	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17088999	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61954875	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61954917	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61954919	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61954920	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61954921	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7333301	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34743	chr13:54313729-54424593	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54320000-54320400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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