Variant report

Variant	rs9598450
Chromosome Location	chr13:63006924-63006925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13378225	0.98[EUR][1000 genomes]
rs13378226	0.95[EUR][1000 genomes]
rs1572405	0.87[AFR][1000 genomes]
rs1591527	0.92[EUR][1000 genomes]
rs727918	0.95[EUR][1000 genomes]
rs7319919	0.85[EUR][1000 genomes]
rs73503726	0.98[EUR][1000 genomes]
rs73503768	0.88[EUR][1000 genomes]
rs7981934	0.95[EUR][1000 genomes]
rs9598464	0.89[EUR][1000 genomes]
rs9598466	0.88[EUR][1000 genomes]
rs9598467	0.88[EUR][1000 genomes]
rs9598470	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9805472	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv561894	chr13:62952228-63013622	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63006800-63008000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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