Variant report

Variant	rs9600502
Chromosome Location	chr13:76177958-76177959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13378544	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9593095	0.86[AFR][1000 genomes]
rs9600495	0.86[AFR][1000 genomes]
rs9600500	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900571	chr13:76123678-76207565	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv900577	chr13:76132484-76207565	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76124600-76183000	Weak transcription	Small Intestine	intestine
2	chr13:76125000-76192800	Weak transcription	Brain Substantia Nigra	brain
3	chr13:76125000-76209600	Weak transcription	Right Ventricle	heart
4	chr13:76125400-76191000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:76125600-76182000	Weak transcription	Fetal Brain Male	brain
6	chr13:76129400-76180400	Weak transcription	Thymus	Thymus
7	chr13:76141800-76178400	Weak transcription	HepG2	liver
8	chr13:76144000-76192400	Weak transcription	NHLF	lung
9	chr13:76144200-76194400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr13:76148000-76178600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:76148200-76192200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:76148200-76203000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:76148200-76209600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr13:76149000-76179000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:76149800-76180200	Weak transcription	NH-A	brain
16	chr13:76149800-76209600	Weak transcription	Lung	lung
17	chr13:76158400-76192200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:76158600-76182400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr13:76158600-76191400	Weak transcription	Fetal Intestine Small	intestine
20	chr13:76158600-76195200	Weak transcription	NHEK	skin
21	chr13:76158800-76182000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr13:76159000-76194600	Weak transcription	HUVEC	blood vessel
23	chr13:76159000-76209600	Weak transcription	Brain Hippocampus Middle	brain
24	chr13:76159200-76178200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr13:76159200-76180400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:76159200-76182600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr13:76159200-76186800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr13:76159200-76191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:76159400-76189800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:76159400-76201800	Weak transcription	Fetal Lung	lung
31	chr13:76160000-76180400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr13:76160200-76184600	Weak transcription	Fetal Kidney	kidney
33	chr13:76162600-76183400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr13:76164200-76181200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:76164400-76179000	Weak transcription	Pancreas	Pancrea
36	chr13:76164400-76183000	Weak transcription	Hela-S3	cervix
37	chr13:76164600-76178400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr13:76164600-76178800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr13:76164600-76179800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:76164600-76180600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr13:76164600-76181800	Weak transcription	Ovary	ovary
42	chr13:76164600-76182600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr13:76164600-76192000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:76164600-76194600	Weak transcription	Aorta	Aorta
45	chr13:76164600-76209400	Weak transcription	Esophagus	oesophagus
46	chr13:76164800-76180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr13:76164800-76183800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr13:76165000-76178000	Weak transcription	Brain Anterior Caudate	brain
49	chr13:76165200-76209200	Weak transcription	Fetal Muscle Leg	muscle
50	chr13:76165600-76180200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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