Variant report

Variant	rs9603141
Chromosome Location	chr13:37740761-37740762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11147637	0.82[AMR][1000 genomes]
rs2399397	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4054540	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56237212	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6563513	0.84[EUR][1000 genomes]
rs73177068	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7985933	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8001995	0.84[EUR][1000 genomes]
rs9315471	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9532007	0.84[EUR][1000 genomes]
rs9576193	0.82[EUR][1000 genomes]
rs9594194	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9603144	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9603141	FAM48A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37738600-37743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37739000-37742200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:37739000-37743000	Weak transcription	NHDF-Ad	bronchial
4	chr13:37739600-37741400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:37739800-37747400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:37740200-37741000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:37740600-37741400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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