Variant report

Variant	rs9603497
Chromosome Location	chr13:39605331-39605332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39595128..39597127-chr13:39603332..39605869,2	K562	blood:
2	chr13:39599530..39604283-chr13:39604707..39609132,9	K562	blood:
3	chr13:39598668..39601223-chr13:39602617..39605478,2	MCF-7	breast:
4	chr13:39594195..39597127-chr13:39600978..39605869,5	K562	blood:

Variant related genes	Relation type
ENSG00000120685	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55662135	1.00[AFR][1000 genomes]
rs56337003	1.00[EUR][1000 genomes]
rs56357117	1.00[EUR][1000 genomes]
rs59290790	1.00[EUR][1000 genomes]
rs74048409	1.00[EUR][1000 genomes]
rs7996253	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39582000-39608200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:39582400-39605400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr13:39583200-39606600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr13:39587800-39608200	Weak transcription	Fetal Brain Male	brain
5	chr13:39588400-39608800	Weak transcription	Stomach Mucosa	stomach
6	chr13:39588600-39608200	Weak transcription	Hela-S3	cervix
7	chr13:39588600-39610400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:39589200-39608400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:39589200-39609400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:39591200-39608400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:39592400-39606600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:39594200-39605600	Strong transcription	Dnd41	blood
13	chr13:39594600-39605400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr13:39594800-39605400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr13:39594800-39606400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr13:39594800-39608400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:39595000-39606400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:39595000-39606400	Strong transcription	HSMM	muscle
19	chr13:39595000-39606600	Strong transcription	Fetal Thymus	thymus
20	chr13:39598000-39607800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:39598000-39609600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr13:39598200-39606200	Weak transcription	Psoas Muscle	Psoas
23	chr13:39598200-39608800	Weak transcription	Fetal Heart	heart
24	chr13:39598400-39608400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr13:39598400-39609600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:39599000-39608200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:39599000-39608400	Weak transcription	Small Intestine	intestine
28	chr13:39599800-39605600	Strong transcription	Placenta	Placenta
29	chr13:39599800-39607600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr13:39599800-39608200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:39599800-39608400	Weak transcription	Aorta	Aorta
32	chr13:39599800-39608400	Weak transcription	Esophagus	oesophagus
33	chr13:39599800-39608400	Weak transcription	Fetal Intestine Small	intestine
34	chr13:39599800-39608400	Weak transcription	Left Ventricle	heart
35	chr13:39599800-39608400	Weak transcription	Pancreas	Pancrea
36	chr13:39599800-39608400	Weak transcription	Thymus	Thymus
37	chr13:39599800-39608400	Weak transcription	Spleen	Spleen
38	chr13:39599800-39608400	Weak transcription	A549	lung
39	chr13:39599800-39608800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr13:39599800-39609000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr13:39599800-39609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr13:39599800-39609400	Weak transcription	Fetal Stomach	stomach
43	chr13:39599800-39609400	Weak transcription	Gastric	stomach
44	chr13:39599800-39609400	Weak transcription	Right Ventricle	heart
45	chr13:39599800-39610400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:39599800-39610600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:39599800-39611200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:39600000-39608200	Weak transcription	K562	blood
49	chr13:39600000-39608400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:39600000-39608400	Weak transcription	Brain Substantia Nigra	brain

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