Variant report

Variant	rs960600
Chromosome Location	chr7:152853444-152853445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:152853415..152855713-chr7:153110034..153111649,2	K562	blood:

Variant related genes	Relation type
ENSG00000234722	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10226126	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10237970	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs10241297	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10241751	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10247433	0.81[EUR][1000 genomes]
rs10277328	0.87[EUR][1000 genomes]
rs10808001	0.81[EUR][1000 genomes]
rs10952391	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs11523695	0.83[EUR][1000 genomes]
rs11762272	0.82[EUR][1000 genomes]
rs12533547	0.82[EUR][1000 genomes]
rs12703244	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13246403	0.82[EUR][1000 genomes]
rs13247285	0.82[EUR][1000 genomes]
rs1589837	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1589838	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1589839	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2312035	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap]
rs2735624	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3857768	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857769	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3857770	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3857771	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4346923	0.95[LWK][hapmap];1.00[YRI][hapmap]
rs4346924	0.95[LWK][hapmap];1.00[YRI][hapmap]
rs4526277	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4644152	0.95[CEU][hapmap]
rs4726258	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62496008	0.87[EUR][1000 genomes]
rs62496018	0.88[EUR][1000 genomes]
rs715851	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs715855	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs7455526	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810943	0.89[TSI][hapmap]
rs940646	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv532222	chr7:152504090-153450290	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1034937	chr7:152566162-152854895	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831194	chr7:152762400-152963937	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3384970	chr7:152789043-152858746	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv8233	chr7:152850690-152854803	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs960600	GALNTL5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152850400-152854600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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