The 2.0 version of rSNPBase

Variant report

Variant rs960680
Chromosome Location chr4:143236374-143236375
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:143200000-143240000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
2 chr4:143217600-143238600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr4:143217600-143260800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr4:143219400-143236600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr4:143223600-143239200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr4:143225400-143237400 Weak transcription Ovary ovary
7 chr4:143225400-143240200 Weak transcription Esophagus oesophagus
8 chr4:143231400-143239400 Weak transcription HSMMtube muscle
9 chr4:143233800-143241000 Genic enhancers Primary T helper cells PMA-I stimulated --
10 chr4:143233800-143257200 Weak transcription Left Ventricle heart
11 chr4:143234000-143236400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr4:143234000-143242000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
13 chr4:143234200-143240000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr4:143234600-143237400 Enhancers Small Intestine intestine
15 chr4:143234600-143237600 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr4:143234800-143236400 Genic enhancers Dnd41 blood
17 chr4:143234800-143236600 Enhancers Stomach Mucosa stomach
18 chr4:143234800-143271800 Weak transcription Muscle Satellite Cultured Cells --
19 chr4:143235000-143236400 Enhancers Fetal Intestine Small intestine
20 chr4:143235000-143237400 Enhancers Primary T helper 17 cells PMA-I stimulated --
21 chr4:143235000-143240000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
22 chr4:143235000-143240200 Enhancers Primary T killer memory cells from peripheral blood blood
23 chr4:143235000-143243200 Weak transcription Stomach Smooth Muscle stomach
24 chr4:143235000-143244200 Weak transcription NHDF-Ad bronchial
25 chr4:143235400-143236400 Enhancers Primary T cells from cord blood blood
26 chr4:143235400-143236800 Enhancers Primary T regulatory cells fromperipheralblood blood
27 chr4:143235400-143237000 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr4:143235600-143237000 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr4:143235600-143238200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
30 chr4:143235600-143238600 Weak transcription Psoas Muscle Psoas
31 chr4:143235600-143266400 Weak transcription NHEK skin
32 chr4:143235800-143237000 Weak transcription Fetal Lung lung
33 chr4:143235800-143237200 Weak transcription Fetal Heart heart
34 chr4:143235800-143237600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
35 chr4:143235800-143239400 Weak transcription Rectal Smooth Muscle rectum
36 chr4:143235800-143241600 Enhancers Primary T helper cells fromperipheralblood blood
37 chr4:143236000-143237000 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr4:143236000-143237600 Enhancers Duodenum Mucosa Duodenum
39 chr4:143236000-143237600 Enhancers Fetal Intestine Large intestine
40 chr4:143236000-143237600 Enhancers Rectal Mucosa Donor 29 rectum
41 chr4:143236000-143237600 Enhancers Rectal Mucosa Donor 31 rectum
42 chr4:143236000-143239600 Enhancers Primary T helper naive cells from peripheral blood blood
43 chr4:143236000-143240200 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr4:143236000-143240800 Weak transcription Fetal Muscle Leg muscle
45 chr4:143236000-143241600 Enhancers Primary T helper naive cells fromperipheralblood blood
46 chr4:143236000-143252000 Weak transcription HSMM muscle
47 chr4:143236200-143237000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr4:143236200-143237400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr4:143236200-143237600 Enhancers Pancreatic Islets Pancreatic Islet
50 chr4:143236200-143238200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015