Variant report

Variant	rs9608883
Chromosome Location	chr22:30731610-30731611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30728274..30730328-chr22:30731097..30733421,3	MCF-7	breast:
2	chr22:30723840..30727994-chr22:30728827..30733130,4	K562	blood:
3	chr22:30730281..30734311-chr22:30742898..30745201,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs34096486	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3804077	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41281643	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41304671	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41308741	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9606713	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9606715	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606716	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9606717	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606720	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606726	1.00[CEU][hapmap]
rs9606727	0.85[AMR][1000 genomes]
rs9608862	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9608865	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608868	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608876	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608884	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608886	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608897	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9608900	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9608902	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9608905	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs9608906	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv914970	chr22:30619599-30850395	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv834174	chr22:30619760-30746915	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv984527	chr22:30698358-30732712	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv3593	chr22:30705980-30751122	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv1064350	chr22:30724148-30742125	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	n/a
8	nsv1066179	chr22:30724148-30766466	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30723400-30732600	Weak transcription	Right Atrium	heart
2	chr22:30723600-30751600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr22:30723800-30742800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr22:30724400-30750000	Strong transcription	Thymus	Thymus
5	chr22:30724600-30750200	Strong transcription	Osteobl	bone
6	chr22:30724800-30745200	Strong transcription	NHEK	skin
7	chr22:30724800-30750200	Strong transcription	Fetal Intestine Small	intestine
8	chr22:30725200-30733200	Strong transcription	Fetal Muscle Leg	muscle
9	chr22:30725400-30733400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr22:30725400-30743400	Strong transcription	Fetal Stomach	stomach
11	chr22:30725400-30749600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr22:30725400-30750000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr22:30725600-30733600	Genic enhancers	Placenta	Placenta
14	chr22:30725600-30743600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr22:30725600-30744200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr22:30725600-30750200	Strong transcription	Fetal Intestine Large	intestine
17	chr22:30725800-30732400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr22:30725800-30732800	Strong transcription	Liver	Liver
19	chr22:30725800-30736800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr22:30725800-30740600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr22:30725800-30742600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr22:30725800-30743200	Strong transcription	Fetal Thymus	thymus
23	chr22:30725800-30748000	Strong transcription	Dnd41	blood
24	chr22:30726000-30743200	Strong transcription	Fetal Lung	lung
25	chr22:30726400-30740400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr22:30726400-30745400	Strong transcription	HSMM	muscle
27	chr22:30726400-30747000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr22:30726400-30749600	Strong transcription	Fetal Brain Female	brain
29	chr22:30726400-30749600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr22:30726400-30750200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr22:30726400-30750200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr22:30726600-30732400	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr22:30726600-30732400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr22:30726600-30733200	Strong transcription	Spleen	Spleen
35	chr22:30726600-30740400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr22:30726600-30743000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
37	chr22:30726600-30743000	Strong transcription	Lung	lung
38	chr22:30726600-30743400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr22:30726600-30743400	Strong transcription	GM12878-XiMat	blood
40	chr22:30726600-30743600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr22:30726600-30744000	Strong transcription	Rectal Smooth Muscle	rectum
42	chr22:30726600-30744600	Strong transcription	Primary T cells from cord blood	blood
43	chr22:30726600-30744600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr22:30726600-30749200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr22:30726600-30749600	Strong transcription	Primary B cells from cord blood	blood
46	chr22:30726600-30749800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr22:30726600-30750000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr22:30726600-30750000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr22:30726600-30750200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr22:30726600-30750400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links