Variant report

Variant	rs9609033
Chromosome Location	chr22:31047681-31047682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28704032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5994330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5997724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5997729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606757	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9606758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9606763	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9609018	1.00[AFR][1000 genomes]
rs9609025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609038	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31032400-31052400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:31033200-31052000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:31033400-31058200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr22:31033600-31058000	Weak transcription	Adipose Nuclei	Adipose
5	chr22:31033600-31058000	Weak transcription	Fetal Lung	lung
6	chr22:31033800-31057600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:31034000-31049800	Weak transcription	Fetal Brain Female	brain
8	chr22:31034000-31059400	Weak transcription	Aorta	Aorta
9	chr22:31034200-31057800	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:31034200-31058800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr22:31039400-31050600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr22:31040200-31060800	Weak transcription	Fetal Brain Male	brain
13	chr22:31040600-31055800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr22:31041400-31048400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:31043600-31055400	Weak transcription	Fetal Stomach	stomach
16	chr22:31043800-31051600	Weak transcription	Primary T cells from cord blood	blood
17	chr22:31044200-31050400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr22:31044200-31057600	Weak transcription	Ovary	ovary
19	chr22:31044200-31058000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr22:31045000-31048400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr22:31045200-31062800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr22:31045400-31047800	Enhancers	Brain Hippocampus Middle	brain
23	chr22:31045400-31057600	Weak transcription	Colonic Mucosa	Colon
24	chr22:31045400-31057600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr22:31045400-31062800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr22:31045400-31062800	Weak transcription	NH-A	brain
27	chr22:31045600-31047800	Enhancers	Brain Angular Gyrus	brain
28	chr22:31045600-31058200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr22:31045600-31062800	Weak transcription	HSMMtube	muscle
30	chr22:31045800-31050200	Weak transcription	Spleen	Spleen
31	chr22:31045800-31050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr22:31045800-31057600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr22:31045800-31057800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr22:31045800-31061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr22:31045800-31062200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr22:31046000-31050200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr22:31046000-31054800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr22:31046000-31057600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr22:31046000-31057600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr22:31046000-31057600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr22:31046000-31057600	Weak transcription	NHDF-Ad	bronchial
42	chr22:31046000-31057800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr22:31046000-31057800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr22:31046000-31057800	Weak transcription	Osteobl	bone
45	chr22:31046000-31058000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr22:31046000-31058400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr22:31046000-31062000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr22:31046000-31062200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr22:31046000-31062600	Weak transcription	HMEC	breast
50	chr22:31046000-31062600	Weak transcription	NHLF	lung

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