Variant report

Variant	rs9609193
Chromosome Location	chr22:31419033-31419034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31413340..31416231-chr22:31418212..31420315,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11089484	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2016654	0.81[EUR][1000 genomes]
rs2019171	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2019182	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041076	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2079221	0.80[EUR][1000 genomes]
rs2240179	0.83[EUR][1000 genomes]
rs3788426	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3804085	0.83[EUR][1000 genomes]
rs3948685	0.81[EUR][1000 genomes]
rs4820916	0.83[EUR][1000 genomes]
rs4820923	0.81[EUR][1000 genomes]
rs4820925	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4820926	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5749199	0.81[EUR][1000 genomes]
rs5753389	0.83[EUR][1000 genomes]
rs5753407	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs5753410	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs5997807	0.82[EUR][1000 genomes]
rs5997830	0.81[EUR][1000 genomes]
rs5997838	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5997842	0.80[EUR][1000 genomes]
rs5997843	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6518726	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6518729	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs722683	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs722684	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7289831	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7291199	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs737924	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs8135974	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9609183	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609185	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9609188	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv966103	chr22:31410201-31452981	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9609193	TUG1	Cis_1M	lymphoblastoid	RTeQTL
rs9609193	MORC2-AS1	cis	Thyroid	GTEx
rs9609193	MORC2-AS1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31418400-31419600	Enhancers	Duodenum Mucosa	Duodenum

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