Variant report

Variant	rs9609390
Chromosome Location	chr22:32336218-32336219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32333714..32338666-chr22:32338808..32341895,4	MCF-7	breast:
2	22:32284948-32287956..22:32334260-32338420	K562	blood:
3	chr22:32144199..32146034-chr22:32335578..32338194,2	K562	blood:

Variant related genes	Relation type
ENSG00000128245	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000227813	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12167681	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761432	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3788440	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3827334	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609389	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428046	chr22:32316302-32356963	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32304400-32339600	Weak transcription	Brain Germinal Matrix	brain
2	chr22:32319600-32338000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:32325200-32338800	Weak transcription	Fetal Thymus	thymus
4	chr22:32326000-32339600	Weak transcription	Fetal Lung	lung
5	chr22:32326400-32339200	Weak transcription	Fetal Stomach	stomach
6	chr22:32329200-32339600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr22:32330400-32339400	Weak transcription	Pancreas	Pancrea
8	chr22:32331200-32339600	Weak transcription	Brain Substantia Nigra	brain
9	chr22:32332200-32339600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr22:32332400-32339400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr22:32332400-32339600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr22:32332600-32339400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:32332800-32339400	Weak transcription	Brain Hippocampus Middle	brain
14	chr22:32332800-32339400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr22:32332800-32339600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr22:32333000-32339600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr22:32333200-32338200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr22:32333400-32338600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr22:32333400-32339600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr22:32334000-32339400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr22:32334200-32339400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr22:32334200-32339400	Weak transcription	Fetal Heart	heart
23	chr22:32334600-32339400	Weak transcription	Fetal Muscle Leg	muscle
24	chr22:32334800-32336800	Weak transcription	K562	blood
25	chr22:32334800-32339400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr22:32334800-32339400	Weak transcription	Fetal Brain Female	brain
27	chr22:32335600-32339400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr22:32335600-32339400	Weak transcription	Fetal Brain Male	brain
29	chr22:32335600-32339600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr22:32335600-32339600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr22:32336000-32339400	Weak transcription	Spleen	Spleen
32	chr22:32336200-32339400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr22:32336200-32339600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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