Variant report

Variant	rs9609434
Chromosome Location	chr22:32527874-32527875
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1076905	1.00[JPT][hapmap]
rs1076906	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11089537	0.86[ASN][1000 genomes]
rs12159428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12160839	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006233	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2006253	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28590200	1.00[ASN][1000 genomes]
rs55920759	0.86[ASN][1000 genomes]
rs5994471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994472	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994473	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998234	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998249	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998264	0.86[ASN][1000 genomes]
rs7287435	1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8138116	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142970	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9606897	1.00[JPT][hapmap]
rs9606899	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9606900	1.00[JPT][hapmap]
rs9606901	1.00[ASN][1000 genomes]
rs9606909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606910	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609397	1.00[JPT][hapmap]
rs9609413	1.00[JPT][hapmap]
rs9609421	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9609422	1.00[ASN][1000 genomes]
rs9609424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609438	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609445	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv2830423	chr22:32477718-32767825	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv2422247	chr22:32486448-32788258	Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv834178	chr22:32490449-32677521	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32515800-32533600	Weak transcription	Right Atrium	heart
2	chr22:32520200-32528000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links