Variant report

Variant	rs9609443
Chromosome Location	chr22:32539649-32539650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17746358	0.89[EUR][1000 genomes]
rs2413069	0.87[EUR][1000 genomes]
rs8141732	0.84[EUR][1000 genomes]
rs9606904	0.84[EUR][1000 genomes]
rs9606905	0.84[EUR][1000 genomes]
rs9606907	0.89[EUR][1000 genomes]
rs9606908	0.89[EUR][1000 genomes]
rs9609427	0.89[EUR][1000 genomes]
rs9609432	0.86[EUR][1000 genomes]
rs9609441	0.89[EUR][1000 genomes]
rs9609444	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9621386	0.89[EUR][1000 genomes]
rs9621391	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834177	chr22:32416679-32594663	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv948789	chr22:32462505-32764760	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1065175	chr22:32467617-32761093	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv544680	chr22:32467617-32761093	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv2830423	chr22:32477718-32767825	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv2422247	chr22:32486448-32788258	Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv834178	chr22:32490449-32677521	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32534600-32540400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr22:32534600-32540800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr22:32534800-32540400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr22:32536600-32541600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr22:32536800-32540000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr22:32537400-32539800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr22:32537400-32541400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr22:32537400-32541400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr22:32537800-32541400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr22:32537800-32541400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr22:32537800-32541400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr22:32537800-32541400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr22:32538000-32541400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr22:32538600-32540400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr22:32538800-32541400	Enhancers	Primary hematopoietic stem cells	blood
16	chr22:32539000-32540400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr22:32539000-32540400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr22:32539000-32540400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr22:32539000-32540400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr22:32539400-32540400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr22:32539600-32540000	Enhancers	Duodenum Mucosa	Duodenum
22	chr22:32539600-32540600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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