Variant report

Variant	rs9613580
Chromosome Location	chr22:28616356-28616357
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17502181	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2056962	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2223369	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2346395	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs9608668	0.89[EUR][1000 genomes]
rs9608677	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs9613574	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9613581	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9613588	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28600200-28616400	Weak transcription	Ovary	ovary
2	chr22:28604600-28617800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:28611800-28616400	Weak transcription	Left Ventricle	heart
4	chr22:28612200-28625600	Weak transcription	Aorta	Aorta
5	chr22:28612200-28634800	Weak transcription	Dnd41	blood
6	chr22:28612600-28616400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr22:28613800-28618800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr22:28614600-28618000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr22:28615000-28618000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr22:28615800-28626400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr22:28616000-28616600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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