Variant report

Variant	rs961402
Chromosome Location	chr4:141830252-141830253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1364887	0.88[ASN][1000 genomes]
rs1863301	0.83[EUR][1000 genomes]
rs717818	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7698736	0.83[EUR][1000 genomes]
rs9308134	0.81[CEU][hapmap];0.90[CHB][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141789600-141831600	Weak transcription	Aorta	Aorta
2	chr4:141816200-141851400	Weak transcription	Brain Anterior Caudate	brain
3	chr4:141816400-141831600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:141817800-141831800	Weak transcription	Pancreas	Pancrea
5	chr4:141823200-141855800	Weak transcription	Osteobl	bone
6	chr4:141823600-141831600	Weak transcription	Fetal Brain Female	brain
7	chr4:141825200-141831800	Weak transcription	Fetal Intestine Small	intestine
8	chr4:141825400-141831600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:141825400-141831600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:141825400-141831600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:141825400-141831600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:141825400-141831600	Weak transcription	Right Ventricle	heart
13	chr4:141825400-141831800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:141825800-141847200	Weak transcription	Fetal Kidney	kidney
15	chr4:141826000-141834000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:141826400-141831800	Weak transcription	Adipose Nuclei	Adipose
17	chr4:141826600-141835000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:141826600-141836600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:141826800-141831600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:141826800-141833800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:141827200-141831800	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:141827800-141831800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:141828200-141833600	Weak transcription	Spleen	Spleen
24	chr4:141828400-141833400	Weak transcription	Esophagus	oesophagus
25	chr4:141828400-141834400	Weak transcription	Right Atrium	heart
26	chr4:141828800-141833600	Weak transcription	Psoas Muscle	Psoas
27	chr4:141829000-141831600	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:141829000-141831600	Weak transcription	Left Ventricle	heart
29	chr4:141829000-141831600	Weak transcription	Ovary	ovary
30	chr4:141829000-141831600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:141829000-141831800	Weak transcription	Fetal Stomach	stomach
32	chr4:141829000-141833000	Weak transcription	Fetal Lung	lung
33	chr4:141829000-141834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:141829200-141831600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:141829600-141845600	Weak transcription	Fetal Heart	heart
36	chr4:141829800-141831600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr4:141830200-141831800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:141830200-141831800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:141830200-141847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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