Variant report

Variant	rs961734
Chromosome Location	chr4:15430034-15430035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1029973	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642505	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12649187	0.80[ASN][1000 genomes]
rs12649193	0.80[ASN][1000 genomes]
rs16892028	0.82[CHB][hapmap]
rs2314589	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59402503	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15427000-15431400	Active TSS	Aorta	Aorta
2	chr4:15428000-15430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:15428000-15430200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:15428400-15430400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:15428600-15430400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:15428600-15430600	Enhancers	NHDF-Ad	bronchial
7	chr4:15428600-15430800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:15428600-15430800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:15428600-15431400	Enhancers	Adipose Nuclei	Adipose
10	chr4:15428800-15430800	Enhancers	Fetal Stomach	stomach
11	chr4:15428800-15435400	Weak transcription	NHEK	skin
12	chr4:15429000-15430600	Enhancers	Colon Smooth Muscle	Colon
13	chr4:15429000-15430600	Enhancers	Fetal Lung	lung
14	chr4:15429000-15430800	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:15429200-15430800	Enhancers	Brain Substantia Nigra	brain
16	chr4:15429600-15430600	Enhancers	Brain Anterior Caudate	brain
17	chr4:15429600-15430600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:15429600-15430600	Enhancers	Fetal Muscle Leg	muscle
19	chr4:15429600-15430800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:15429600-15430800	Enhancers	Brain Germinal Matrix	brain
21	chr4:15429600-15430800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr4:15429800-15430400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr4:15429800-15430400	Enhancers	Small Intestine	intestine
24	chr4:15429800-15430800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr4:15429800-15435200	Weak transcription	Osteobl	bone
26	chr4:15430000-15430200	Enhancers	Rectal Smooth Muscle	rectum
27	chr4:15430000-15430200	Active TSS	Stomach Smooth Muscle	stomach
28	chr4:15430000-15430600	Enhancers	Brain Hippocampus Middle	brain
29	chr4:15430000-15430800	Enhancers	Ovary	ovary
30	chr4:15430000-15435000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links