Variant report

Variant	rs9620758
Chromosome Location	chr22:28352585-28352586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12167128	0.82[EUR][1000 genomes]
rs12169782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12170161	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13058351	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs138630	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34734418	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7286795	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7292859	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs926467	0.89[ASN][1000 genomes]
rs9620755	0.95[ASN][1000 genomes]
rs9625355	0.84[ASN][1000 genomes]
rs9625368	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9625378	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9985181	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28316400-28358600	Weak transcription	Placenta	Placenta
2	chr22:28316400-28370200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr22:28316400-28376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr22:28316400-28378000	Weak transcription	Esophagus	oesophagus
5	chr22:28318800-28382000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr22:28319600-28358000	Weak transcription	Brain Germinal Matrix	brain
7	chr22:28319600-28383000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr22:28321000-28354800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:28321200-28358400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr22:28321400-28379000	Weak transcription	Primary B cells from cord blood	blood
11	chr22:28322000-28365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:28322000-28366200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr22:28326800-28368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:28329400-28377800	Weak transcription	Primary T cells from cord blood	blood
15	chr22:28339400-28367800	Weak transcription	Fetal Intestine Small	intestine
16	chr22:28346000-28356600	Weak transcription	HepG2	liver
17	chr22:28347600-28355200	Weak transcription	Left Ventricle	heart
18	chr22:28348400-28355400	Weak transcription	Ovary	ovary
19	chr22:28348400-28357800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr22:28348800-28358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr22:28348800-28358400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr22:28349200-28355000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr22:28349200-28355200	Weak transcription	Psoas Muscle	Psoas
24	chr22:28349200-28358400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr22:28349400-28358000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr22:28349600-28354800	Weak transcription	Liver	Liver
27	chr22:28349600-28355400	Weak transcription	Fetal Lung	lung
28	chr22:28351000-28362200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr22:28351800-28355000	Weak transcription	Fetal Heart	heart
30	chr22:28352000-28357600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr22:28352400-28352800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr22:28352400-28353400	ZNF genes & repeats	Fetal Stomach	stomach

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