Variant report

Variant	rs9620782
Chromosome Location	chr22:28745938-28745939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:28743920..28746526-chr22:28747537..28749124,2	K562	blood:
2	chr17:56707487..56710036-chr22:28743789..28746572,2	MCF-7	breast:
3	chr22:28745543..28747734-chr22:28752651..28754673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11090536	1.00[AMR][1000 genomes]
rs12165615	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12166350	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs12168729	0.80[AFR][1000 genomes]
rs9620791	0.84[AFR][1000 genomes]
rs9620795	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625458	0.84[AFR][1000 genomes]
rs9625497	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28736400-28746600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr22:28737200-28747200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr22:28738000-28751600	Weak transcription	Left Ventricle	heart
4	chr22:28741600-28747600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr22:28741600-28752000	Weak transcription	HSMM	muscle
6	chr22:28741600-28753200	Weak transcription	Brain Germinal Matrix	brain
7	chr22:28741600-28759000	Weak transcription	Fetal Stomach	stomach
8	chr22:28742800-28746000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr22:28742800-28759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr22:28743000-28759000	Weak transcription	Dnd41	blood
11	chr22:28743800-28746200	Enhancers	Fetal Heart	heart
12	chr22:28744200-28748800	Enhancers	Fetal Brain Male	brain
13	chr22:28744400-28746200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:28744400-28747000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr22:28744400-28747000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr22:28744400-28748800	Enhancers	Fetal Brain Female	brain
17	chr22:28744800-28746400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr22:28745000-28746000	Enhancers	Fetal Lung	lung
19	chr22:28745000-28746800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr22:28745200-28746000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr22:28745200-28747200	Weak transcription	Brain Hippocampus Middle	brain
22	chr22:28745200-28747600	Weak transcription	Ovary	ovary
23	chr22:28745200-28748800	Weak transcription	Psoas Muscle	Psoas
24	chr22:28745200-28754400	Weak transcription	Brain Anterior Caudate	brain
25	chr22:28745400-28746800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr22:28745800-28746600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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