Variant report

Variant	rs9620927
Chromosome Location	chr22:30318425-30318426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30315541..30318524-chr22:30322847..30324530,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12167519	1.00[AFR][1000 genomes]
rs12169015	1.00[AFR][1000 genomes]
rs12169042	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1064489	chr22:30316627-30361881	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30287000-30319600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr22:30304400-30321000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr22:30305600-30327400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr22:30307400-30321000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr22:30307400-30321200	Weak transcription	Esophagus	oesophagus
6	chr22:30309200-30326400	Weak transcription	Pancreas	Pancrea
7	chr22:30309400-30319600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr22:30310000-30327600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr22:30310200-30319400	Weak transcription	Right Atrium	heart
10	chr22:30310200-30321000	Weak transcription	Lung	lung
11	chr22:30310800-30321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr22:30311000-30333200	Weak transcription	Primary B cells from cord blood	blood
13	chr22:30311600-30324200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr22:30311600-30343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr22:30311800-30340400	Weak transcription	HSMM	muscle
16	chr22:30312400-30322800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr22:30312600-30321000	Weak transcription	Right Ventricle	heart
18	chr22:30312600-30326400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr22:30312600-30339800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr22:30313000-30323600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr22:30313000-30343800	Weak transcription	Fetal Stomach	stomach
22	chr22:30313600-30321000	Weak transcription	Left Ventricle	heart
23	chr22:30313600-30339800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr22:30313600-30354200	Weak transcription	Small Intestine	intestine
25	chr22:30314200-30319600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:30314200-30319600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr22:30314200-30321200	Weak transcription	Brain Angular Gyrus	brain
28	chr22:30314200-30334200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr22:30314400-30319600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr22:30314400-30328200	Weak transcription	Osteobl	bone
31	chr22:30314600-30319400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr22:30314600-30319400	Weak transcription	Adipose Nuclei	Adipose
33	chr22:30314600-30321200	Weak transcription	Brain Hippocampus Middle	brain
34	chr22:30314600-30329200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr22:30314800-30319400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr22:30315600-30319600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr22:30315800-30319600	Weak transcription	Colon Smooth Muscle	Colon
38	chr22:30315800-30321000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr22:30316000-30320200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr22:30317400-30318800	Weak transcription	Psoas Muscle	Psoas
41	chr22:30317400-30319400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr22:30318000-30319600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr22:30318000-30321000	Weak transcription	Ovary	ovary
44	chr22:30318000-30321600	Weak transcription	Fetal Intestine Small	intestine
45	chr22:30318000-30334000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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