Variant report

Variant	rs9621195
Chromosome Location	chr22:31520472-31520473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31519059..31520976-chr22:31535041..31537963,2	K562	blood:
2	chr22:31519081..31520607-chr22:31520876..31523639,2	MCF-7	breast:
3	chr22:31519012..31520650-chr22:31555414..31558501,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100078	Chromatin interaction
ENSG00000264141	Chromatin interaction
ENSG00000138942	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2232184	0.88[AMR][1000 genomes]
rs3788427	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5997872	0.91[YRI][hapmap]
rs7285683	0.85[CHB][hapmap]
rs8135641	0.85[CEU][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9621190	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31519000-31521400	Weak transcription	Spleen	Spleen
2	chr22:31519200-31527600	Weak transcription	Esophagus	oesophagus
3	chr22:31519200-31532600	Weak transcription	Ovary	ovary
4	chr22:31519400-31522800	Weak transcription	K562	blood
5	chr22:31519400-31535400	Weak transcription	Lung	lung
6	chr22:31519600-31521000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:31519600-31522600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:31519600-31522600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr22:31519600-31522800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr22:31519600-31522800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr22:31519600-31522800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr22:31519600-31523200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr22:31519600-31523200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr22:31519600-31523400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr22:31519600-31536000	Weak transcription	Brain Germinal Matrix	brain
16	chr22:31519800-31520600	Enhancers	Fetal Intestine Large	intestine
17	chr22:31519800-31520600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr22:31519800-31522400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:31519800-31522600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr22:31519800-31522600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr22:31519800-31524200	Weak transcription	Left Ventricle	heart
22	chr22:31519800-31525600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr22:31519800-31527600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr22:31519800-31528800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:31519800-31531600	Weak transcription	Brain Anterior Caudate	brain
26	chr22:31519800-31532000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr22:31519800-31532800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr22:31519800-31536000	Weak transcription	Gastric	stomach
29	chr22:31520000-31520800	Genic enhancers	Fetal Intestine Small	intestine
30	chr22:31520000-31521200	Enhancers	Pancreas	Pancrea
31	chr22:31520000-31524000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr22:31520000-31527600	Weak transcription	Stomach Mucosa	stomach
33	chr22:31520000-31531200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr22:31520000-31533200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr22:31520200-31520800	Weak transcription	Fetal Brain Male	brain
36	chr22:31520200-31523200	Weak transcription	Colonic Mucosa	Colon
37	chr22:31520200-31524000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr22:31520200-31535800	Weak transcription	Fetal Brain Female	brain
39	chr22:31520400-31520600	Enhancers	Right Ventricle	heart
40	chr22:31520400-31524200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr22:31520400-31538800	Weak transcription	Right Atrium	heart

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