Variant report
Variant | rs962129 |
---|---|
Chromosome Location | chr19:52014146-52014147 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000268777 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10402495 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10419489 | 0.97[ASN][1000 genomes] |
rs10421023 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10421468 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs12461323 | 0.93[ASN][1000 genomes] |
rs12461345 | 0.93[ASN][1000 genomes] |
rs12463300 | 0.85[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
rs13343377 | 0.82[JPT][hapmap] |
rs2034889 | 0.91[ASN][1000 genomes] |
rs2034891 | 0.86[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
rs2864097 | 0.82[JPT][hapmap] |
rs3810105 | 0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs62116175 | 0.93[ASN][1000 genomes] |
rs62116177 | 0.93[ASN][1000 genomes] |
rs62116178 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs62116179 | 0.97[ASN][1000 genomes] |
rs6509545 | 0.89[AFR][1000 genomes];0.84[ASN][1000 genomes] |
rs7246846 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs8106176 | 0.86[ASN][1000 genomes] |
rs8106598 | 0.88[CHD][hapmap] |
rs8110247 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs8113414 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs9304717 | 0.97[ASN][1000 genomes] |
rs962130 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9676254 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9676256 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9676266 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9676272 | 0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066308 | chr19:51680133-52103974 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
2 | nsv544049 | chr19:51680133-52103974 | Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
3 | nsv544051 | chr19:51944903-52147459 | Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
4 | esv2758504 | chr19:51991896-52266700 | Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 542 gene(s) | inside rSNPs | diseases |
5 | esv2758767 | chr19:51991896-52604625 | Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 578 gene(s) | inside rSNPs | diseases |
6 | nsv469584 | chr19:52001381-52151821 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
7 | nsv482654 | chr19:52001381-52151821 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:52002600-52015000 | Enhancers | Primary monocytes fromperipheralblood | blood |
2 | chr19:52012400-52014600 | Enhancers | Monocytes-CD14+_RO01746 | blood |
3 | chr19:52012600-52014800 | Enhancers | K562 | blood |
4 | chr19:52013000-52014600 | Enhancers | Primary neutrophils fromperipheralblood | blood |