Variant report

Variant	rs9621320
Chromosome Location	chr22:32107604-32107605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32102727-32109893..22:32846948-32860159	GM12878	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10154415	1.00[AMR][1000 genomes]
rs12165610	1.00[AMR][1000 genomes]
rs12166668	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12166752	1.00[AMR][1000 genomes]
rs12167269	1.00[AMR][1000 genomes]
rs12167380	1.00[AMR][1000 genomes]
rs12167999	1.00[AMR][1000 genomes]
rs12169596	1.00[AMR][1000 genomes]
rs12170049	1.00[AMR][1000 genomes]
rs13433570	1.00[AMR][1000 genomes]
rs28374120	1.00[AMR][1000 genomes]
rs28760352	1.00[AMR][1000 genomes]
rs56662300	1.00[AMR][1000 genomes]
rs5749296	1.00[AMR][1000 genomes]
rs57955202	1.00[AMR][1000 genomes]
rs60117275	1.00[AMR][1000 genomes]
rs60746452	1.00[AMR][1000 genomes]
rs61323004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7364312	1.00[AMR][1000 genomes]
rs73881392	1.00[AMR][1000 genomes]
rs73881394	1.00[AMR][1000 genomes]
rs73881395	1.00[AMR][1000 genomes]
rs73881396	1.00[AMR][1000 genomes]
rs73881398	1.00[AMR][1000 genomes]
rs9619202	1.00[AMR][1000 genomes]
rs9619209	1.00[AMR][1000 genomes]
rs9619213	1.00[AMR][1000 genomes]
rs9619214	1.00[AMR][1000 genomes]
rs9619216	1.00[AMR][1000 genomes]
rs9619227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9619228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9619236	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9619238	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621273	1.00[AMR][1000 genomes]
rs9621274	1.00[AMR][1000 genomes]
rs9621276	1.00[AMR][1000 genomes]
rs9621277	1.00[AMR][1000 genomes]
rs9621281	1.00[AMR][1000 genomes]
rs9621283	1.00[AMR][1000 genomes]
rs9621284	1.00[AMR][1000 genomes]
rs9621293	1.00[AMR][1000 genomes]
rs9621297	1.00[AMR][1000 genomes]
rs9621298	1.00[AMR][1000 genomes]
rs9621306	1.00[AMR][1000 genomes]
rs9621308	1.00[AMR][1000 genomes]
rs9621310	1.00[AMR][1000 genomes]
rs9621314	1.00[AMR][1000 genomes]
rs9621337	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621343	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621356	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
3	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
5	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
6	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
9	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
11	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
12	chr22:32089200-32113800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr22:32089400-32126000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr22:32089800-32108000	Weak transcription	A549	lung
15	chr22:32091800-32108200	Weak transcription	Pancreas	Pancrea
16	chr22:32092000-32113800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr22:32093800-32108000	Weak transcription	Fetal Brain Male	brain
18	chr22:32095400-32113400	Strong transcription	Fetal Intestine Large	intestine
19	chr22:32098200-32107800	Weak transcription	Colonic Mucosa	Colon
20	chr22:32098600-32111600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr22:32099400-32110000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr22:32099600-32108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:32099600-32108000	Weak transcription	Fetal Kidney	kidney
24	chr22:32099600-32111400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr22:32099800-32108000	Weak transcription	Small Intestine	intestine
26	chr22:32100800-32107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr22:32100800-32107800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr22:32100800-32108000	Weak transcription	Brain Anterior Caudate	brain
29	chr22:32100800-32108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr22:32100800-32108000	Weak transcription	K562	blood
31	chr22:32100800-32108800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr22:32101000-32107800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr22:32101000-32107800	Weak transcription	Brain Substantia Nigra	brain
34	chr22:32101000-32108000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr22:32101000-32108000	Weak transcription	Brain Germinal Matrix	brain
36	chr22:32101000-32108000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr22:32101000-32108000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr22:32101000-32108000	Weak transcription	NHLF	lung
39	chr22:32101000-32108200	Weak transcription	HMEC	breast
40	chr22:32101000-32110200	Weak transcription	Fetal Heart	heart
41	chr22:32101000-32110400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr22:32101200-32107800	Weak transcription	Left Ventricle	heart
43	chr22:32101200-32107800	Weak transcription	HSMMtube	muscle
44	chr22:32101200-32107800	Weak transcription	NHEK	skin
45	chr22:32101200-32108000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr22:32101200-32108000	Weak transcription	Aorta	Aorta
47	chr22:32101200-32108000	Weak transcription	Esophagus	oesophagus
48	chr22:32101200-32108000	Weak transcription	Gastric	stomach
49	chr22:32101200-32108000	Weak transcription	Right Ventricle	heart
50	chr22:32101200-32108000	Weak transcription	Spleen	Spleen

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