Variant report

Variant	rs9621725
Chromosome Location	chr22:34001372-34001373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12169587	1.00[AMR][1000 genomes]
rs7287000	1.00[AMR][1000 genomes]
rs8139892	1.00[AMR][1000 genomes]
rs8141377	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9619354	1.00[AMR][1000 genomes]
rs9619361	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621720	1.00[AMR][1000 genomes]
rs9621730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621731	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9808890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1062127	chr22:33755479-34085278	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv544683	chr22:33755479-34085278	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv531588	chr22:33776857-34150188	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv914983	chr22:33800119-34035034	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1060283	chr22:33809137-34043739	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv544684	chr22:33809137-34043739	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1055791	chr22:33822226-34159536	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1065417	chr22:33823850-34053325	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
11	nsv933309	chr22:33825232-34053000	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
12	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
13	nsv917167	chr22:33852676-34137036	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1062832	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv544686	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv914987	chr22:33920421-34047427	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
18	nsv588934	chr22:33965639-34035034	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv914988	chr22:33975998-34083987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv934161	chr22:33979015-34118621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33965200-34045800	Weak transcription	Pancreas	Pancrea
2	chr22:33981800-34006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr22:33981800-34006800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr22:33985200-34001800	Weak transcription	Gastric	stomach
5	chr22:33985400-34009400	Weak transcription	GM12878-XiMat	blood
6	chr22:33988600-34019200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr22:33988600-34020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:33989400-34005800	Weak transcription	Colon Smooth Muscle	Colon
9	chr22:33989600-34020400	Weak transcription	Fetal Intestine Large	intestine
10	chr22:33990000-34001400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr22:33990000-34006200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr22:33990400-34001600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr22:33990400-34003000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr22:33992200-34006800	Weak transcription	Fetal Intestine Small	intestine
15	chr22:33992800-34001800	Weak transcription	Brain Substantia Nigra	brain
16	chr22:33994000-34001800	Weak transcription	Right Atrium	heart
17	chr22:33994000-34006000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr22:33994000-34029600	Weak transcription	Aorta	Aorta
19	chr22:33994200-34002000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr22:33994200-34010600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr22:33994200-34020600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr22:33994200-34050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr22:33994400-34002400	Weak transcription	Brain Hippocampus Middle	brain
24	chr22:33994400-34003600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr22:33995600-34008200	Weak transcription	HSMMtube	muscle
26	chr22:33995800-34007000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr22:33995800-34049800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr22:33996000-34006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr22:33996200-34001600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr22:33996200-34002200	Weak transcription	Adipose Nuclei	Adipose
31	chr22:33996200-34005800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr22:33996400-34006800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr22:33996800-34002600	Weak transcription	Right Ventricle	heart
34	chr22:33998200-34001600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr22:33998200-34002800	Weak transcription	Esophagus	oesophagus
36	chr22:33999200-34001800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr22:34000000-34006400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr22:34000400-34003000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr22:34000400-34003000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr22:34000600-34001600	Weak transcription	Fetal Lung	lung
41	chr22:34000600-34002600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr22:34000600-34003000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr22:34000600-34006600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr22:34000600-34006600	Weak transcription	Fetal Stomach	stomach
45	chr22:34000600-34006800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr22:34000600-34014600	Weak transcription	Liver	Liver
47	chr22:34000600-34014800	Weak transcription	Ovary	ovary
48	chr22:34000600-34015200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr22:34000600-34017800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr22:34000800-34001800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links