Variant report

Variant	rs9625385
Chromosome Location	chr22:28415514-28415515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:25042188..25043157-chr22:28415103..28415934,2	MCF-7	breast:
2	chr22:28415494..28416454-chr22:28838189..28838855,4	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12166350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12168729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45457893	1.00[AMR][1000 genomes]
rs9620750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625369	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625373	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625376	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28386200-28416000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr22:28390400-28416200	Weak transcription	Colonic Mucosa	Colon
3	chr22:28395000-28416400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr22:28396000-28422400	Weak transcription	Primary T cells from cord blood	blood
5	chr22:28397200-28423000	Weak transcription	HepG2	liver
6	chr22:28399400-28425800	Weak transcription	Liver	Liver
7	chr22:28405400-28416200	Weak transcription	NHDF-Ad	bronchial
8	chr22:28405400-28416200	Weak transcription	NHLF	lung
9	chr22:28405400-28416400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr22:28405400-28416400	Weak transcription	Fetal Kidney	kidney
11	chr22:28405800-28416000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr22:28405800-28416200	Weak transcription	Left Ventricle	heart
13	chr22:28408800-28416200	Genic enhancers	Fetal Muscle Trunk	muscle
14	chr22:28409000-28428000	Genic enhancers	Fetal Muscle Leg	muscle
15	chr22:28409200-28416200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr22:28409400-28415800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr22:28409400-28430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr22:28409600-28416000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr22:28410000-28416000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr22:28410200-28415800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr22:28410200-28416000	Weak transcription	Brain Substantia Nigra	brain
22	chr22:28410200-28423000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr22:28410200-28423400	Weak transcription	Gastric	stomach
24	chr22:28410400-28415800	Weak transcription	Brain Angular Gyrus	brain
25	chr22:28410400-28416200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr22:28410400-28424200	Weak transcription	Aorta	Aorta
27	chr22:28411000-28416000	Weak transcription	Ovary	ovary
28	chr22:28411000-28423600	Weak transcription	Fetal Intestine Large	intestine
29	chr22:28411800-28418200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr22:28411800-28418400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr22:28412000-28416000	Strong transcription	Fetal Intestine Small	intestine
32	chr22:28412000-28418200	Enhancers	Right Ventricle	heart
33	chr22:28412400-28416000	Weak transcription	Colon Smooth Muscle	Colon
34	chr22:28412400-28416200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr22:28412400-28423000	Weak transcription	Adipose Nuclei	Adipose
36	chr22:28412600-28415800	Weak transcription	Placenta	Placenta
37	chr22:28412600-28415800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr22:28412600-28416000	Strong transcription	Fetal Stomach	stomach
39	chr22:28412600-28416200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr22:28412600-28416200	Weak transcription	Fetal Lung	lung
41	chr22:28412800-28416400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr22:28412800-28416400	Weak transcription	Fetal Brain Female	brain
43	chr22:28413200-28415800	Weak transcription	Lung	lung
44	chr22:28413200-28416000	Weak transcription	Brain Anterior Caudate	brain
45	chr22:28413200-28416000	Weak transcription	Pancreas	Pancrea
46	chr22:28413200-28416400	Weak transcription	Right Atrium	heart
47	chr22:28413800-28415600	Weak transcription	Brain Germinal Matrix	brain
48	chr22:28414000-28416400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr22:28414000-28416600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr22:28414200-28415600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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