Variant report

Variant	rs9625702
Chromosome Location	chr22:29492784-29492785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29491726..29493460-chr22:29507047..29509625,2	K562	blood:
2	chr22:29490478..29492943-chr22:29507351..29509908,2	K562	blood:
3	chr22:29492716..29496133-chr22:29496800..29499655,3	K562	blood:

Variant related genes	Relation type
ENSG00000226772	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11913747	1.00[AMR][1000 genomes]
rs12170250	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16987011	1.00[AMR][1000 genomes]
rs16987087	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450817	1.00[AMR][1000 genomes]
rs58690800	1.00[AMR][1000 genomes]
rs6005989	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6006059	1.00[AMR][1000 genomes]
rs61500482	1.00[AMR][1000 genomes]
rs73397056	1.00[AMR][1000 genomes]
rs73397059	1.00[AMR][1000 genomes]
rs73397080	1.00[AMR][1000 genomes]
rs73399009	1.00[AMR][1000 genomes]
rs73399038	1.00[AMR][1000 genomes]
rs8138179	1.00[AMR][1000 genomes]
rs9625701	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29475600-29505600	Weak transcription	Spleen	Spleen
2	chr22:29476800-29494800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:29478800-29498200	Weak transcription	Brain Germinal Matrix	brain
4	chr22:29480600-29498000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr22:29486600-29494800	Weak transcription	NHEK	skin
7	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
8	chr22:29488400-29521200	Weak transcription	Lung	lung
9	chr22:29488600-29494800	Weak transcription	Placenta	Placenta
10	chr22:29489000-29494800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:29489200-29494800	Weak transcription	Adipose Nuclei	Adipose
12	chr22:29489600-29492800	Weak transcription	Small Intestine	intestine
13	chr22:29489600-29493000	Enhancers	HepG2	liver
14	chr22:29489600-29499800	Strong transcription	Dnd41	blood
15	chr22:29489800-29493000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr22:29490000-29492800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr22:29490000-29501600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:29490000-29505200	Weak transcription	Aorta	Aorta
19	chr22:29490000-29514000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr22:29490200-29492800	Strong transcription	Thymus	Thymus
21	chr22:29490200-29492800	Weak transcription	HSMM	muscle
22	chr22:29490200-29502800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr22:29490200-29503600	Weak transcription	HMEC	breast
24	chr22:29490400-29492800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr22:29490400-29492800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr22:29490400-29492800	Weak transcription	HSMMtube	muscle
27	chr22:29490400-29493000	Weak transcription	NHLF	lung
28	chr22:29490400-29499000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr22:29490400-29501400	Weak transcription	Colon Smooth Muscle	Colon
30	chr22:29490400-29508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr22:29490400-29539800	Weak transcription	Psoas Muscle	Psoas
32	chr22:29490600-29495000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr22:29490800-29492800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr22:29490800-29492800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr22:29491000-29493000	Enhancers	Right Atrium	heart
36	chr22:29491000-29493200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr22:29491200-29521200	Weak transcription	Colonic Mucosa	Colon
38	chr22:29491600-29492800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr22:29491600-29492800	Strong transcription	Fetal Intestine Large	intestine
40	chr22:29491600-29495000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr22:29491600-29522200	Weak transcription	Liver	Liver
42	chr22:29491800-29493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr22:29491800-29494600	Weak transcription	Fetal Brain Female	brain
44	chr22:29491800-29494800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr22:29491800-29503600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr22:29491800-29504400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr22:29491800-29505400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr22:29492000-29494400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr22:29492000-29494400	Weak transcription	Fetal Thymus	thymus
50	chr22:29492000-29501000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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