Variant report

Variant	rs9625937
Chromosome Location	chr22:30596152-30596153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30589990..30596479-chr22:30639909..30648381,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268812	Chromatin interaction
ENSG00000128342	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9625934	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv432239	chr22:30580161-30669883	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30591800-30597400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:30592000-30601400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr22:30592600-30596200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr22:30592600-30598200	Weak transcription	Esophagus	oesophagus
5	chr22:30592800-30598000	Weak transcription	Gastric	stomach
6	chr22:30592800-30602800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:30592800-30604800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:30593000-30598000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr22:30593200-30598000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr22:30593200-30598200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr22:30593200-30598600	Weak transcription	Lung	lung
12	chr22:30593200-30600600	Weak transcription	Spleen	Spleen
13	chr22:30593400-30597000	Weak transcription	Stomach Mucosa	stomach
14	chr22:30593400-30597800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr22:30593400-30598200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:30593400-30598600	Weak transcription	Placenta	Placenta
17	chr22:30593600-30597800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr22:30593600-30597800	Weak transcription	Fetal Stomach	stomach
19	chr22:30593600-30598200	Weak transcription	HSMMtube	muscle
20	chr22:30593600-30598400	Weak transcription	Fetal Intestine Large	intestine
21	chr22:30593600-30598600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr22:30593600-30600800	Weak transcription	Small Intestine	intestine
23	chr22:30593600-30603000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr22:30593800-30597400	Enhancers	A549	lung
25	chr22:30593800-30597800	Weak transcription	Fetal Kidney	kidney
26	chr22:30593800-30598000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr22:30593800-30600400	Weak transcription	Osteobl	bone
28	chr22:30594400-30597800	Weak transcription	NH-A	brain
29	chr22:30594400-30598600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr22:30594800-30597800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr22:30594800-30597800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr22:30594800-30597800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr22:30594800-30597800	Weak transcription	NHDF-Ad	bronchial
34	chr22:30595000-30597800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr22:30595000-30597800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr22:30595000-30600400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr22:30595200-30597000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr22:30595200-30597800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr22:30595200-30597800	Weak transcription	NHEK	skin
40	chr22:30595200-30598200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr22:30595400-30597000	Weak transcription	Hela-S3	cervix
42	chr22:30595400-30598200	Weak transcription	Fetal Thymus	thymus
43	chr22:30595600-30600800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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