Variant report
Variant | rs962636 |
---|---|
Chromosome Location | chr10:90518972-90518973 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:90515063..90517764-chr10:90518050..90519657,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10887852 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1236939 | 0.99[ASN][1000 genomes] |
rs12570840 | 0.85[ASN][1000 genomes] |
rs12571514 | 0.82[ASN][1000 genomes] |
rs12765161 | 0.83[ASN][1000 genomes] |
rs1368177 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs1653833 | 0.91[ASN][1000 genomes] |
rs1653834 | 0.96[ASN][1000 genomes] |
rs1653835 | 0.96[ASN][1000 genomes] |
rs1769694 | 0.91[ASN][1000 genomes] |
rs1769695 | 0.96[ASN][1000 genomes] |
rs1769696 | 0.96[ASN][1000 genomes] |
rs1769698 | 0.96[ASN][1000 genomes] |
rs1769699 | 0.96[ASN][1000 genomes] |
rs1769701 | 0.96[ASN][1000 genomes] |
rs1769702 | 0.94[ASN][1000 genomes] |
rs184228 | 0.99[ASN][1000 genomes] |
rs188571 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs2053006 | 0.96[ASN][1000 genomes] |
rs2604963 | 0.99[ASN][1000 genomes] |
rs2604964 | 0.91[ASN][1000 genomes] |
rs2604966 | 0.99[ASN][1000 genomes] |
rs2776656 | 0.98[ASN][1000 genomes] |
rs2776657 | 0.99[ASN][1000 genomes] |
rs2776658 | 0.99[ASN][1000 genomes] |
rs2790695 | 0.99[ASN][1000 genomes] |
rs2790696 | 0.99[ASN][1000 genomes] |
rs2790697 | 0.99[ASN][1000 genomes] |
rs2790702 | 0.96[ASN][1000 genomes] |
rs303452 | 0.99[ASN][1000 genomes] |
rs303455 | 0.99[ASN][1000 genomes] |
rs303458 | 0.99[ASN][1000 genomes] |
rs303459 | 0.99[ASN][1000 genomes] |
rs303460 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs303461 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs303462 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs303463 | 0.94[ASN][1000 genomes] |
rs303465 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs303466 | 0.80[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs364303 | 0.99[ASN][1000 genomes] |
rs365263 | 0.98[ASN][1000 genomes] |
rs372178 | 0.99[ASN][1000 genomes] |
rs374362 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs375790 | 0.99[ASN][1000 genomes] |
rs375842 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs376264 | 0.98[ASN][1000 genomes] |
rs377423 | 0.99[ASN][1000 genomes] |
rs377776 | 0.99[ASN][1000 genomes] |
rs379756 | 0.93[ASN][1000 genomes] |
rs381424 | 0.99[ASN][1000 genomes] |
rs381963 | 0.96[ASN][1000 genomes] |
rs382221 | 0.99[ASN][1000 genomes] |
rs383115 | 0.99[ASN][1000 genomes] |
rs386101 | 0.98[ASN][1000 genomes] |
rs388954 | 0.93[ASN][1000 genomes] |
rs389728 | 0.98[ASN][1000 genomes] |
rs390152 | 0.98[ASN][1000 genomes] |
rs390400 | 0.92[ASN][1000 genomes] |
rs391260 | 0.96[ASN][1000 genomes] |
rs391722 | 0.99[ASN][1000 genomes] |
rs392430 | 0.92[ASN][1000 genomes] |
rs395231 | 0.96[ASN][1000 genomes] |
rs396952 | 0.95[ASN][1000 genomes] |
rs398126 | 0.80[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs399949 | 0.91[ASN][1000 genomes] |
rs400659 | 0.99[ASN][1000 genomes] |
rs403572 | 0.96[ASN][1000 genomes] |
rs405147 | 0.96[ASN][1000 genomes] |
rs405635 | 0.92[ASN][1000 genomes] |
rs405854 | 0.96[ASN][1000 genomes] |
rs406671 | 0.96[ASN][1000 genomes] |
rs408922 | 0.99[ASN][1000 genomes] |
rs409079 | 0.96[ASN][1000 genomes] |
rs410713 | 0.99[ASN][1000 genomes] |
rs410725 | 0.90[ASN][1000 genomes] |
rs411101 | 0.98[ASN][1000 genomes] |
rs411713 | 0.98[ASN][1000 genomes] |
rs412227 | 0.92[ASN][1000 genomes] |
rs416301 | 0.98[ASN][1000 genomes] |
rs417243 | 0.92[ASN][1000 genomes] |
rs418276 | 0.80[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs419014 | 0.96[ASN][1000 genomes] |
rs419049 | 0.95[ASN][1000 genomes] |
rs419912 | 0.99[ASN][1000 genomes] |
rs422360 | 0.97[ASN][1000 genomes] |
rs427541 | 0.98[ASN][1000 genomes] |
rs427720 | 0.98[ASN][1000 genomes] |
rs428425 | 0.99[ASN][1000 genomes] |
rs430517 | 0.80[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs431003 | 0.99[ASN][1000 genomes] |
rs432202 | 0.98[ASN][1000 genomes] |
rs434028 | 0.96[ASN][1000 genomes] |
rs434133 | 0.99[ASN][1000 genomes] |
rs435159 | 0.96[ASN][1000 genomes] |
rs436833 | 0.99[ASN][1000 genomes] |
rs436861 | 0.92[ASN][1000 genomes] |
rs438177 | 0.92[ASN][1000 genomes] |
rs440103 | 0.96[ASN][1000 genomes] |
rs442466 | 0.96[ASN][1000 genomes] |
rs443886 | 0.96[ASN][1000 genomes] |
rs444676 | 0.98[ASN][1000 genomes] |
rs444764 | 0.96[ASN][1000 genomes] |
rs447651 | 0.96[ASN][1000 genomes] |
rs450252 | 0.98[ASN][1000 genomes] |
rs452283 | 0.99[ASN][1000 genomes] |
rs501040 | 0.80[AFR][1000 genomes];0.90[ASN][1000 genomes] |
rs515333 | 0.98[ASN][1000 genomes] |
rs517884 | 0.80[AFR][1000 genomes];0.95[ASN][1000 genomes] |
rs529258 | 0.99[ASN][1000 genomes] |
rs566053 | 0.99[ASN][1000 genomes] |
rs843782 | 0.80[AFR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529324 | chr10:90198865-90738588 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
2 | nsv831941 | chr10:90410488-90587332 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv1042848 | chr10:90466032-91318474 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
4 | nsv540741 | chr10:90466032-91318474 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
5 | nsv1043015 | chr10:90467067-90593692 | Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
6 | nsv467415 | chr10:90478483-90600865 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
7 | nsv551840 | chr10:90478483-90600865 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
8 | nsv1052613 | chr10:90500521-90526379 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:90514600-90519400 | Weak transcription | HSMM | muscle |
2 | chr10:90514600-90523200 | Weak transcription | NHEK | skin |
3 | chr10:90514800-90523400 | Weak transcription | Hela-S3 | cervix |
4 | chr10:90515000-90523200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr10:90515400-90519000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
6 | chr10:90515400-90519400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
7 | chr10:90518400-90519400 | Enhancers | Primary neutrophils fromperipheralblood | blood |
8 | chr10:90518600-90519000 | Enhancers | Monocytes-CD14+_RO01746 | blood |
9 | chr10:90518800-90519800 | Enhancers | Primary monocytes fromperipheralblood | blood |