Variant report

Variant	rs9628667
Chromosome Location	chr1:157985481-157985482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:157984297..157985914-chr1:157988656..157990593,2	MCF-7	breast:
2	chr1:157984151..157985923-chr1:157986996..157989537,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10796988	1.00[CEU][hapmap]
rs17418759	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2224932	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4971173	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73018972	1.00[EUR][1000 genomes]
rs7514059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7521855	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7527643	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7549283	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157969000-157988000	Weak transcription	Psoas Muscle	Psoas
2	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:157979800-157991000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:157981200-157987200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:157981600-157985600	Enhancers	NH-A	brain
6	chr1:157981600-157986600	Weak transcription	Pancreas	Pancrea
7	chr1:157981600-157988200	Weak transcription	Right Ventricle	heart
8	chr1:157981800-157985600	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:157981800-157986600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:157981800-157988000	Weak transcription	Colonic Mucosa	Colon
11	chr1:157982000-157985600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:157982200-157986400	Weak transcription	Spleen	Spleen
13	chr1:157982200-157987800	Weak transcription	Fetal Heart	heart
14	chr1:157982200-157988200	Weak transcription	Fetal Intestine Large	intestine
15	chr1:157982200-157989200	Enhancers	Osteobl	bone
16	chr1:157982400-157991000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:157982600-157985800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:157982800-157985600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:157982800-157986200	Weak transcription	HUVEC	blood vessel
20	chr1:157983000-157985600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:157983000-157985600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr1:157983000-157985600	Genic enhancers	HMEC	breast
23	chr1:157983000-157987000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:157983200-157985600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr1:157983200-157989000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:157983400-157985600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:157983400-157985800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr1:157983400-157986400	Enhancers	A549	lung
29	chr1:157983400-157989200	Enhancers	Adipose Nuclei	Adipose
30	chr1:157983600-157985600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr1:157983600-157985600	Enhancers	Placenta	Placenta
32	chr1:157983600-157986400	Enhancers	NHDF-Ad	bronchial
33	chr1:157983600-157987400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:157983600-157989000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:157983800-157985600	Enhancers	HSMMtube	muscle
36	chr1:157983800-157993200	Enhancers	Fetal Kidney	kidney
37	chr1:157984000-157985600	Enhancers	Stomach Smooth Muscle	stomach
38	chr1:157984000-157988000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:157984000-157989000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr1:157984200-157987000	Enhancers	Right Atrium	heart
41	chr1:157984200-157988200	Weak transcription	Fetal Intestine Small	intestine
42	chr1:157984400-157985800	Enhancers	Colon Smooth Muscle	Colon
43	chr1:157984400-157986400	Weak transcription	Fetal Lung	lung
44	chr1:157984400-157986400	Weak transcription	Left Ventricle	heart
45	chr1:157984400-157986800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:157984400-157986800	Enhancers	NHLF	lung
47	chr1:157984400-157989200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr1:157984400-157995400	Weak transcription	Fetal Brain Female	brain
49	chr1:157984600-157985600	Strong transcription	Hela-S3	cervix
50	chr1:157984600-157986400	Weak transcription	Aorta	Aorta

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