Variant report

Variant	rs9631436
Chromosome Location	chr3:105590120-105590121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1021858	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1021859	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1039544	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10511246	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1075739	0.80[ASN][1000 genomes]
rs11921710	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11924742	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12633654	0.83[ASN][1000 genomes]
rs12633854	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12635232	0.80[ASN][1000 genomes]
rs12637560	0.88[ASN][1000 genomes]
rs12637809	0.82[ASN][1000 genomes]
rs12639271	0.80[ASN][1000 genomes]
rs1503921	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1561922	0.84[ASN][1000 genomes]
rs16851523	0.80[ASN][1000 genomes]
rs16851539	0.80[ASN][1000 genomes]
rs16851563	0.82[ASN][1000 genomes]
rs16851570	0.82[ASN][1000 genomes]
rs16851587	0.81[ASN][1000 genomes]
rs16851630	0.88[ASN][1000 genomes]
rs1867192	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1910499	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1947000	0.82[ASN][1000 genomes]
rs2089091	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197208	0.82[ASN][1000 genomes]
rs2197209	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4894840	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57520912	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58340800	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59534462	0.88[ASN][1000 genomes]
rs59611997	0.83[ASN][1000 genomes]
rs60619938	0.82[ASN][1000 genomes]
rs6437620	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6437621	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6437626	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6767627	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6804152	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73854891	0.84[ASN][1000 genomes]
rs73854894	0.88[ASN][1000 genomes]
rs73857222	0.88[ASN][1000 genomes]
rs7619449	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7624400	0.81[ASN][1000 genomes]
rs7629357	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7634844	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7641825	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7648842	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7649466	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9657904	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9789988	0.81[ASN][1000 genomes]
rs9826886	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9846534	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9869648	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9874600	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105589000-105590200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:105589000-105590200	Weak transcription	Small Intestine	intestine
3	chr3:105589000-105590600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:105589000-105591000	Enhancers	Fetal Heart	heart
5	chr3:105589000-105591000	Enhancers	Fetal Intestine Small	intestine
6	chr3:105589000-105595200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:105589000-105601200	Weak transcription	Aorta	Aorta
8	chr3:105589000-105601200	Weak transcription	Thymus	Thymus
9	chr3:105589000-105601200	Weak transcription	NH-A	brain
10	chr3:105589200-105590200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:105589200-105590800	Enhancers	Fetal Lung	lung
12	chr3:105589200-105591000	Enhancers	Stomach Mucosa	stomach
13	chr3:105589200-105592400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:105589200-105601200	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:105589400-105590200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:105589400-105590200	Weak transcription	Fetal Kidney	kidney
17	chr3:105589400-105590200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr3:105589400-105594400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:105589400-105596400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:105589400-105596800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:105589600-105590200	Weak transcription	Fetal Intestine Large	intestine
22	chr3:105589600-105590800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:105589600-105590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:105589600-105594600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:105589800-105590200	Enhancers	K562	blood
26	chr3:105589800-105590600	Weak transcription	NHDF-Ad	bronchial
27	chr3:105589800-105590800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:105589800-105591400	Weak transcription	Osteobl	bone
29	chr3:105589800-105595000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:105589800-105595400	Weak transcription	Primary T cells from cord blood	blood
31	chr3:105589800-105595800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:105589800-105595800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:105590000-105590400	Enhancers	Fetal Brain Male	brain
34	chr3:105590000-105590600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr3:105590000-105595600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:105590000-105595800	Weak transcription	Primary B cells from cord blood	blood

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