Variant report

Variant	rs9632687
Chromosome Location	chr7:97981334-97981335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:97973522..97975312-chr7:97980531..97983134,2	MCF-7	breast:
2	chr7:97981229..97983769-chr7:97985673..97988919,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10231278	1.00[AMR][1000 genomes]
rs10237767	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10265580	1.00[AMR][1000 genomes]
rs10953246	1.00[YRI][hapmap]
rs6957281	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1033029	chr7:97773232-98017992	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv539033	chr7:97773232-98017992	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv1026477	chr7:97869446-98034129	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
12	nsv888766	chr7:97975542-98123880	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97944800-97983400	Weak transcription	HepG2	liver
2	chr7:97953800-97989800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:97954400-97983800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:97958800-97981400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:97966800-97983800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:97968000-97982000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:97968400-97983600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:97969200-97981400	Weak transcription	Fetal Intestine Large	intestine
9	chr7:97969200-97981800	Weak transcription	Colonic Mucosa	Colon
10	chr7:97971200-97981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:97971200-97981600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:97971200-97981600	Weak transcription	Osteobl	bone
13	chr7:97972400-97983400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:97973000-97987000	Weak transcription	Liver	Liver
15	chr7:97973000-97989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:97973200-97984000	Weak transcription	Pancreas	Pancrea
17	chr7:97973200-97989600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:97973600-97983400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:97976600-97981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:97977200-98010200	Weak transcription	GM12878-XiMat	blood
21	chr7:97978000-97981400	Strong transcription	NHEK	skin
22	chr7:97978000-97985200	Enhancers	Placenta	Placenta
23	chr7:97978400-97982000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:97978400-97983400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:97978400-97983400	Weak transcription	Esophagus	oesophagus
26	chr7:97978600-97982200	Strong transcription	Fetal Intestine Small	intestine
27	chr7:97978600-97983800	Weak transcription	Lung	lung
28	chr7:97979000-97981800	Weak transcription	Gastric	stomach
29	chr7:97979400-97989600	Weak transcription	K562	blood
30	chr7:97979600-97981600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:97979800-97982200	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:97979800-97983400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:97980000-97983400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:97980400-97981400	Strong transcription	HMEC	breast
35	chr7:97980600-97981400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr7:97980600-97982800	Enhancers	Stomach Mucosa	stomach
37	chr7:97980800-97981800	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr7:97981000-97981400	Weak transcription	Hela-S3	cervix
39	chr7:97981000-97982400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:97981000-97983400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:97981000-97988600	Weak transcription	Fetal Stomach	stomach
42	chr7:97981200-97981600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:97981200-97981600	Genic enhancers	A549	lung
44	chr7:97981200-97981800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:97981200-97982800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:97981200-97983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:97981200-97983600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:97981200-97983600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:97981200-97983800	Weak transcription	H9 Cell Line	embryonic stem cell

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