Variant report

Variant	rs9632884
Chromosome Location	chr9:22072301-22072302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22071994..22076005-chr9:22076573..22081529,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10116277	0.82[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[MKK][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10738607	0.85[CEU][hapmap]
rs10738610	0.81[CEU][hapmap]
rs10757269	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10757270	0.81[EUR][1000 genomes]
rs10757271	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10757272	0.85[CEU][hapmap]
rs10811652	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1333040	0.81[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1333042	0.82[ASW][hapmap];0.85[CEU][hapmap]
rs1333046	0.81[CEU][hapmap]
rs1333048	0.81[CEU][hapmap]
rs1412832	0.95[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs1537370	0.85[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1537373	0.85[CEU][hapmap]
rs1556516	0.85[CEU][hapmap]
rs1831733	0.85[EUR][1000 genomes]
rs2891168	0.85[CEU][hapmap]
rs4977574	0.85[CEU][hapmap]
rs6475606	0.82[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[MKK][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7859727	0.85[CEU][hapmap]
rs9632885	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1018514	chr9:21944275-22075326	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22053800-22079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:22055600-22079800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:22067400-22073400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:22067600-22073400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:22068200-22072600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:22071200-22078800	Weak transcription	Dnd41	blood
7	chr9:22072000-22072400	Bivalent Enhancer	Primary T cells from cord blood	blood
8	chr9:22072000-22072400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:22072000-22076200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:22072000-22076200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:22072000-22076200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:22072000-22076400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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