Variant report
| Variant | rs9633907 |
|---|---|
| Chromosome Location | chr11:4937943-4937944 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TCF7L2 | chr11:4937773-4938313 | HepG2 | liver: | n/a | chr11:4937979-4937989 chr11:4937980-4937989 chr11:4937978-4937992 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR51G2 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10500627 | 0.82[EUR][1000 genomes] |
| rs10836934 | 0.84[EUR][1000 genomes] |
| rs10836949 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10836950 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10836954 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10836955 | 0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs10836956 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11034435 | 1.00[CEU][hapmap] |
| rs11034596 | 0.84[EUR][1000 genomes] |
| rs11034602 | 0.84[EUR][1000 genomes] |
| rs11034658 | 0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs11034672 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs7116979 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
