Variant report

Variant	rs9635355
Chromosome Location	chr15:60410842-60410843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr15:60410782-60411280	H1-hESC	embryonic stem cell:	n/a	n/a
2	SP1	chr15:60410435-60410915	H1-hESC	embryonic stem cell:	n/a	chr15:60410597-60410611
3	SIN3A	chr15:60410379-60411032	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000259223	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11631324	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62004005	0.93[EUR][1000 genomes]
rs89380	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9635355	NUP35	trans	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60407200-60411000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:60407600-60413000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:60408800-60412200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:60408800-60412800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr15:60409000-60411400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:60409000-60411600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr15:60409600-60411600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr15:60409800-60411000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
9	chr15:60409800-60411800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr15:60410000-60411000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr15:60410000-60411000	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr15:60410000-60411800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:60410200-60411200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr15:60410400-60411200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:60410400-60411600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:60410600-60411200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr15:60410600-60412000	Enhancers	Brain Germinal Matrix	brain
18	chr15:60410600-60414400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:60410800-60411000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:60410800-60413200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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