Variant report

Variant	rs9636161
Chromosome Location	chr19:56900486-56900487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:56898892-56900702	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:56875882..56877892-chr19:56898924..56901485,2	K562	blood:
2	chr19:56899387..56901463-chr19:56903012..56905294,2	K562	blood:
3	chr19:56896992..56902951-chr19:56903012..56907037,12	K562	blood:

Variant related genes	Relation type
ZNF582-AS1	TF binding region
ENSG00000018869	Chromatin interaction
ENSG00000267454	Chromatin interaction
ENSG00000267606	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7258010	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9636161	ZNF582-AS1	cis	Artery Tibial	GTEx
rs9636161	ZNF582-AS1	cis	lung	GTEx
rs9636161	ZNF324	cis	cerebellum	SCAN
rs9636161	ZNF582-AS1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56881200-56904000	ZNF genes & repeats	Liver	Liver
2	chr19:56889200-56901200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:56889200-56904400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:56889400-56904000	Weak transcription	Fetal Heart	heart
5	chr19:56889400-56904000	Weak transcription	K562	blood
6	chr19:56890200-56903600	Weak transcription	Fetal Brain Male	brain
7	chr19:56890600-56904000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr19:56894200-56900800	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr19:56894200-56903800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:56894800-56902000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:56894800-56902000	Strong transcription	Brain Hippocampus Middle	brain
12	chr19:56894800-56903400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr19:56895200-56903200	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr19:56895200-56903400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr19:56895400-56901200	Weak transcription	Fetal Thymus	thymus
16	chr19:56895400-56902200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:56895400-56902600	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr19:56895800-56902000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr19:56896000-56901800	Strong transcription	Brain Substantia Nigra	brain
20	chr19:56896000-56904400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr19:56896200-56901200	Weak transcription	Colon Smooth Muscle	Colon
22	chr19:56896400-56901200	Weak transcription	Colonic Mucosa	Colon
23	chr19:56896600-56901400	Weak transcription	Fetal Brain Female	brain
24	chr19:56896600-56902000	Strong transcription	Stomach Smooth Muscle	stomach
25	chr19:56896600-56904200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr19:56896800-56900600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr19:56896800-56900800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr19:56896800-56903800	Weak transcription	Fetal Kidney	kidney
29	chr19:56897000-56903000	Strong transcription	Fetal Muscle Leg	muscle
30	chr19:56897400-56900600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr19:56897400-56901400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr19:56897400-56904200	Weak transcription	NHLF	lung
33	chr19:56897600-56902000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:56897800-56901200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr19:56898000-56901800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr19:56898000-56902000	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr19:56898000-56902800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr19:56898200-56904000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr19:56898200-56904000	Weak transcription	Osteobl	bone
40	chr19:56898200-56904200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr19:56898400-56901800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr19:56898600-56902000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr19:56898600-56903000	Strong transcription	Brain Cingulate Gyrus	brain
44	chr19:56898800-56903000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr19:56898800-56903400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr19:56899000-56901400	Strong transcription	Fetal Intestine Large	intestine
47	chr19:56899200-56901200	Weak transcription	Fetal Lung	lung
48	chr19:56899200-56901800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr19:56899200-56902000	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr19:56899200-56902200	Strong transcription	Brain Inferior Temporal Lobe	brain

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