Variant report

Variant	rs9637478
Chromosome Location	chr3:56015514-56015515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11713228	0.82[EUR][1000 genomes]
rs11717188	0.81[EUR][1000 genomes]
rs11917737	0.80[EUR][1000 genomes]
rs13077670	0.82[EUR][1000 genomes]
rs13087971	0.80[EUR][1000 genomes]
rs13097006	0.81[EUR][1000 genomes]
rs1458056	0.80[EUR][1000 genomes]
rs1458059	0.80[EUR][1000 genomes]
rs34917685	0.82[EUR][1000 genomes]
rs922003	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56003800-56017000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56013200-56022200	Weak transcription	Pancreas	Pancrea
4	chr3:56015200-56015600	Enhancers	Fetal Heart	heart
5	chr3:56015200-56015800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:56015400-56015800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:56015400-56016000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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