Variant report

Variant	rs9638642
Chromosome Location	chr7:71680084-71680085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10215010	0.82[AFR][1000 genomes]
rs10215011	0.81[AFR][1000 genomes]
rs10215139	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs10215553	0.80[AFR][1000 genomes]
rs10216201	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs10216236	0.80[YRI][hapmap]
rs10229537	0.89[YRI][hapmap]
rs10231072	0.84[AFR][1000 genomes]
rs10234843	0.83[YRI][hapmap]
rs10234985	0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs10238714	0.83[AFR][1000 genomes]
rs10238909	0.83[AFR][1000 genomes]
rs10239699	0.83[AFR][1000 genomes]
rs10243740	0.83[AFR][1000 genomes]
rs10253092	0.87[YRI][hapmap]
rs10256020	0.93[YRI][hapmap]
rs10256498	0.90[YRI][hapmap]
rs10268103	0.82[AFR][1000 genomes]
rs10274751	0.93[YRI][hapmap]
rs1034618	0.83[AFR][1000 genomes]
rs1034619	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs10464195	0.83[YRI][hapmap]
rs11767480	0.92[AFR][1000 genomes]
rs11767481	0.92[AFR][1000 genomes]
rs11770522	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs11981552	0.83[AFR][1000 genomes]
rs11983557	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs16869625	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs17502576	0.96[ASN][1000 genomes]
rs1914378	0.92[YRI][hapmap]
rs1914384	0.80[AFR][1000 genomes]
rs1914385	0.85[AFR][1000 genomes]
rs1914386	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs1914390	0.87[AFR][1000 genomes]
rs28401746	0.83[AFR][1000 genomes]
rs28432195	0.83[AFR][1000 genomes]
rs28548784	0.83[AFR][1000 genomes]
rs28785225	0.83[AFR][1000 genomes]
rs34801868	0.89[YRI][hapmap]
rs35058779	0.81[AFR][1000 genomes]
rs3846986	0.96[ASN][1000 genomes]
rs4317470	0.84[AFR][1000 genomes]
rs4457209	0.93[YRI][hapmap]
rs4512281	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs4719220	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs479035	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs61288133	0.83[AFR][1000 genomes]
rs6968408	0.89[YRI][hapmap]
rs6977668	0.89[YRI][hapmap]
rs73704335	0.90[AFR][1000 genomes]
rs73704336	0.86[AFR][1000 genomes]
rs7782517	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs7799436	0.93[YRI][hapmap]
rs9638639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1015848	chr7:71552185-71736068	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv538942	chr7:71552185-71736068	ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831024	chr7:71569349-71735250	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv529620	chr7:71604785-71935721	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv492243	chr7:71648955-71935721	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1017911	chr7:71665417-71714246	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv524800	chr7:71666864-71714102	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1019532	chr7:71676605-71714246	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1019700	chr7:71677836-71844973	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv538943	chr7:71677836-71844973	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71641200-71686800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:71673200-71687200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:71677000-71682000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:71677600-71681400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:71678800-71680600	Weak transcription	Fetal Thymus	thymus
6	chr7:71679000-71686400	Weak transcription	Thymus	Thymus
7	chr7:71679000-71690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:71679600-71682400	Weak transcription	Right Atrium	heart

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