Variant report

Variant	rs9638940
Chromosome Location	chr7:38575510-38575511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10259950	0.96[ASN][1000 genomes]
rs10264790	0.96[ASN][1000 genomes]
rs10265223	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10276324	0.92[ASN][1000 genomes]
rs10280133	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11764380	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2083147	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3807390	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3807396	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7777111	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785965	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7799083	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs967022	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38563800-38578400	Weak transcription	Aorta	Aorta
2	chr7:38564200-38580800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:38564800-38578400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38573800-38575600	Enhancers	Fetal Brain Male	brain
5	chr7:38575000-38579200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:38575400-38575600	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links