Variant report

Variant	rs9639987
Chromosome Location	chr7:47883404-47883405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47879370..47881092-chr7:47882304..47884978,2	MCF-7	breast:
2	chr7:47881606..47884051-chr7:47891535..47893676,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10245949	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs10280228	0.89[YRI][hapmap]
rs1074780	0.80[CHB][hapmap]
rs11769398	0.82[JPT][hapmap]
rs12670579	0.96[CEU][hapmap]
rs13228166	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13237611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1551275	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17710832	0.96[CEU][hapmap]
rs17710874	0.82[JPT][hapmap]
rs1980279	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2123608	0.96[CEU][hapmap]
rs2177164	0.96[CEU][hapmap]
rs3757379	0.96[CEU][hapmap]
rs3800568	0.96[CEU][hapmap];0.82[MEX][hapmap]
rs4543454	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs4724647	0.80[CHB][hapmap]
rs6463451	0.95[CEU][hapmap]
rs6947216	0.96[CEU][hapmap];0.82[MEX][hapmap]
rs6960513	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967514	0.94[ASW][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6968437	0.96[CEU][hapmap]
rs6975745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783295	0.96[CEU][hapmap];0.82[MEX][hapmap]
rs7783894	0.96[CEU][hapmap]
rs876467	0.96[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9639016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv830991	chr7:47854530-48025996	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47855800-47902400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:47867200-47886000	Weak transcription	Right Atrium	heart
3	chr7:47867800-47886000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:47868800-47886000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:47869800-47885400	Weak transcription	HSMMtube	muscle
6	chr7:47877200-47884800	Weak transcription	Right Ventricle	heart
7	chr7:47878400-47883800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:47880600-47884800	Weak transcription	Left Ventricle	heart
9	chr7:47882600-47886000	Weak transcription	Gastric	stomach
10	chr7:47882800-47883600	Enhancers	Placenta	Placenta
11	chr7:47883000-47883800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:47883200-47886000	Enhancers	Hela-S3	cervix
13	chr7:47883400-47885800	Enhancers	Fetal Heart	heart

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