Variant report

Variant	rs9641468
Chromosome Location	chr7:111401160-111401161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:111395713..111398642-chr7:111400360..111402475,3	K562	blood:
2	chr7:111399040..111402198-chr7:111403102..111407043,6	K562	blood:
3	chr7:111398842..111402033-chr7:111404296..111409080,5	K562	blood:
4	chr7:111397317..111402479-chr7:112089166..112092063,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10235868	0.84[ASN][1000 genomes]
rs12535961	0.81[ASN][1000 genomes]
rs3801781	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66531668	0.80[ASN][1000 genomes]
rs6968514	0.80[ASN][1000 genomes]
rs9641469	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608196	chr7:111073710-111794368	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv932103	chr7:111092431-111412049	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv869375	chr7:111105151-111470811	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv608215	chr7:111183610-111533520	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1021527	chr7:111194596-111851619	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv539086	chr7:111194596-111851619	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1028740	chr7:111227747-111679401	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1015267	chr7:111303294-111714771	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv539087	chr7:111303294-111714771	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv539088	chr7:111333899-111722341	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv1034375	chr7:111337109-111459099	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111363000-111418000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:111367400-111401600	Weak transcription	Colonic Mucosa	Colon
3	chr7:111373600-111414000	Weak transcription	Right Ventricle	heart
4	chr7:111379600-111433600	Weak transcription	Esophagus	oesophagus
5	chr7:111384400-111409000	Weak transcription	Fetal Stomach	stomach
6	chr7:111385600-111403600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:111389200-111416800	Weak transcription	Placenta	Placenta
8	chr7:111390400-111435600	Weak transcription	Psoas Muscle	Psoas
9	chr7:111390600-111431800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:111390800-111401600	Weak transcription	Fetal Intestine Large	intestine
11	chr7:111391400-111401200	Weak transcription	Hela-S3	cervix
12	chr7:111393200-111401800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:111393200-111401800	Strong transcription	HUVEC	blood vessel
14	chr7:111393800-111417000	Weak transcription	Fetal Kidney	kidney
15	chr7:111394200-111401800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:111395000-111416800	Weak transcription	Pancreas	Pancrea
17	chr7:111397200-111402600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:111397200-111411400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:111397200-111411400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:111397200-111421800	Weak transcription	NHDF-Ad	bronchial
21	chr7:111397600-111405800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:111397600-111406200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:111397800-111403600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:111397800-111409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:111397800-111421200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:111398000-111401800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:111398000-111405600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:111398000-111406000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:111398000-111408800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:111398000-111409200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:111398000-111409400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:111398000-111435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:111398200-111434000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:111398400-111409200	Weak transcription	HepG2	liver
35	chr7:111398600-111401200	Strong transcription	Adipose Nuclei	Adipose
36	chr7:111399000-111401400	Weak transcription	Lung	lung
37	chr7:111399000-111416600	Weak transcription	Fetal Muscle Leg	muscle
38	chr7:111399000-111432800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr7:111399400-111409000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:111399400-111417600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:111399600-111407600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:111399800-111402000	Weak transcription	A549	lung
43	chr7:111400200-111403800	Weak transcription	NHEK	skin
44	chr7:111400200-111405800	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:111400400-111401200	Enhancers	Brain Germinal Matrix	brain
46	chr7:111400400-111401400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:111400400-111402800	Strong transcription	Fetal Lung	lung
48	chr7:111400400-111403000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:111400400-111403600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:111400400-111404200	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links