Variant report

Variant	rs9641609
Chromosome Location	chr7:118297844-118297845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118297078..118299425-chr7:118301659..118304024,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10500064	0.89[EUR][1000 genomes]
rs11509197	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11761992	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11762065	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11763035	0.93[EUR][1000 genomes]
rs11767676	0.82[ASW][hapmap];0.88[CEU][hapmap];0.93[GIH][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11771057	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11772018	0.80[EUR][1000 genomes]
rs12668697	0.80[EUR][1000 genomes]
rs1355314	0.85[EUR][1000 genomes]
rs1510504	0.84[EUR][1000 genomes]
rs1588447	0.93[GIH][hapmap];0.87[LWK][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap]
rs1606005	0.84[EUR][1000 genomes]
rs1880152	0.84[EUR][1000 genomes]
rs1996945	0.88[CEU][hapmap];0.95[GIH][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2030649	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2049368	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2063370	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175297	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175298	0.90[EUR][1000 genomes]
rs2175299	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2402397	0.80[EUR][1000 genomes]
rs4582494	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4730879	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55698509	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56141723	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57668449	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58071836	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58152297	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62468657	0.81[EUR][1000 genomes]
rs62468658	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62470082	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62470083	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62470084	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62470086	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62470087	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6949669	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778876	0.89[EUR][1000 genomes]
rs7796854	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7797235	0.80[EUR][1000 genomes]
rs960884	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs960886	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641606	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641607	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9641609	CFTR	cis	parietal	SCAN
rs9641609	ING3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118296800-118298000	Enhancers	Dnd41	blood

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