Variant report

Variant	rs9641847
Chromosome Location	chr7:128873825-128873826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:128863779..128867507-chr7:128873644..128876495,3	MCF-7	breast:
2	chr7:128873646..128876213-chr7:128883173..128885864,2	K562	blood:
3	chr7:128868706..128870936-chr7:128872369..128874484,2	K562	blood:

Variant related genes	Relation type
ENSG00000158467	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10215998	1.00[EUR][1000 genomes]
rs10235589	1.00[EUR][1000 genomes]
rs10269495	1.00[EUR][1000 genomes]
rs10281269	0.82[ASW][hapmap];1.00[EUR][1000 genomes]
rs12112383	1.00[MEX][hapmap]
rs12533108	1.00[EUR][1000 genomes]
rs13240723	1.00[EUR][1000 genomes]
rs1405475	1.00[EUR][1000 genomes]
rs1469554	1.00[EUR][1000 genomes]
rs1526898	1.00[EUR][1000 genomes]
rs1526899	1.00[EUR][1000 genomes]
rs1549788	1.00[EUR][1000 genomes]
rs1609043	1.00[EUR][1000 genomes]
rs17168678	1.00[MEX][hapmap]
rs1991645	1.00[EUR][1000 genomes]
rs2402946	1.00[EUR][1000 genomes]
rs2402947	0.82[ASW][hapmap];1.00[EUR][1000 genomes]
rs2463096	1.00[EUR][1000 genomes]
rs2566875	1.00[EUR][1000 genomes]
rs2566881	1.00[EUR][1000 genomes]
rs2566882	1.00[EUR][1000 genomes]
rs2694575	1.00[EUR][1000 genomes]
rs2694576	1.00[EUR][1000 genomes]
rs2694577	1.00[EUR][1000 genomes]
rs2694583	1.00[EUR][1000 genomes]
rs2694591	0.82[ASW][hapmap];1.00[EUR][1000 genomes]
rs2718085	1.00[EUR][1000 genomes]
rs2718090	0.82[ASW][hapmap];1.00[EUR][1000 genomes]
rs2718091	0.82[ASW][hapmap];1.00[EUR][1000 genomes]
rs2718092	1.00[EUR][1000 genomes]
rs2718097	1.00[EUR][1000 genomes]
rs2718100	1.00[EUR][1000 genomes]
rs28399138	1.00[EUR][1000 genomes]
rs28864519	1.00[EUR][1000 genomes]
rs4731567	1.00[EUR][1000 genomes]
rs6467234	0.82[ASW][hapmap];1.00[EUR][1000 genomes]
rs6467236	1.00[EUR][1000 genomes]
rs6949882	1.00[EUR][1000 genomes]
rs6950279	1.00[EUR][1000 genomes]
rs9641848	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831127	chr7:128716256-128874691	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1031284	chr7:128866118-128910506	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128866000-128874400	Weak transcription	HSMM	muscle
2	chr7:128866000-128880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:128866000-128902200	Weak transcription	Gastric	stomach
4	chr7:128866200-128898600	Weak transcription	Thymus	Thymus
5	chr7:128866400-128891400	Weak transcription	Fetal Stomach	stomach
6	chr7:128866400-128899000	Weak transcription	Ovary	ovary
7	chr7:128866600-128879000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:128866600-128880200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:128866600-128880400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:128866600-128901400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:128866800-128878000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:128866800-128889600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:128867000-128884200	Weak transcription	Primary T cells from cord blood	blood
14	chr7:128867000-128898400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:128867200-128909800	Weak transcription	Primary B cells from cord blood	blood
16	chr7:128867600-128885600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr7:128867800-128878400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:128867800-128880400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:128868000-128878400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr7:128868200-128875200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:128868400-128880000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:128868600-128897200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:128868800-128874000	Weak transcription	Fetal Intestine Small	intestine
24	chr7:128868800-128877800	Weak transcription	GM12878-XiMat	blood
25	chr7:128869000-128880000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:128869400-128876000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:128869800-128878000	Weak transcription	NHEK	skin
28	chr7:128869800-128880200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:128869800-128880200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:128871800-128880200	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:128872600-128874400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:128872600-128874400	Weak transcription	Adipose Nuclei	Adipose
33	chr7:128872600-128875800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:128872800-128874200	Weak transcription	Psoas Muscle	Psoas
35	chr7:128872800-128892000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:128873400-128880000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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