Variant report

Variant	rs9641852
Chromosome Location	chr7:129183660-129183661
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12706888	0.84[AFR][1000 genomes]
rs691989	0.85[AFR][1000 genomes]
rs692316	0.84[AFR][1000 genomes]
rs692479	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs692490	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs712736	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3478069	chr7:129157163-129204221	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3478070	chr7:129157177-129204220	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129181400-129192600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:129182200-129185400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:129182400-129183800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr7:129183000-129183800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:129183200-129184000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:129183600-129183800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:129183600-129184000	Enhancers	Liver	Liver
8	chr7:129183600-129184400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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