Variant report

Variant	rs9642929
Chromosome Location	chr8:95729090-95729091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95724740..95726809-chr8:95728368..95731829,3	K562	blood:
2	chr8:95728931..95733735-chr8:95735785..95738955,5	K562	blood:
3	chr8:95728931..95732611-chr8:95833805..95837140,4	MCF-7	breast:
4	chr8:95594768..95596866-chr8:95728891..95731835,2	MCF-7	breast:
5	chr8:95650894..95656484-chr8:95728446..95733482,20	MCF-7	breast:
6	chr8:95727241..95729851-chr8:95730354..95733014,2	K562	blood:

Variant related genes	Relation type
ENSG00000261437	Chromatin interaction
ENSG00000199701	Chromatin interaction
ENSG00000104413	Chromatin interaction
ENSG00000156162	Chromatin interaction
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10094449	0.82[AFR][1000 genomes]
rs11986843	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11991001	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11992120	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11993311	0.82[AFR][1000 genomes]
rs12176630	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16916994	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2722875	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2722882	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28369125	0.82[AFR][1000 genomes]
rs7000241	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73697004	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv511392	chr8:95721252-95732766	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611751	chr8:95721435-95742394	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95713000-95730600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:95714400-95731400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:95716200-95730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:95717200-95730800	Weak transcription	Fetal Intestine Small	intestine
5	chr8:95718400-95731400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:95718800-95731200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:95719200-95730800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:95719400-95730400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:95719400-95730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:95719400-95731000	Weak transcription	Placenta	Placenta
11	chr8:95719600-95731000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:95719800-95730400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:95720000-95731000	Weak transcription	Fetal Intestine Large	intestine
14	chr8:95720200-95731000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:95720200-95731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:95720400-95730800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:95723000-95731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:95724600-95731000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:95725200-95730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:95726600-95730600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:95726600-95731000	Weak transcription	HMEC	breast
22	chr8:95726600-95731000	Weak transcription	NHEK	skin
23	chr8:95726800-95730800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:95726800-95730800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:95729000-95731600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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