Variant report
| Variant | rs9643737 |
|---|---|
| Chromosome Location | chr8:79397190-79397191 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:56283155..56284954-chr8:79396075..79397773,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124225 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11775617 | 0.85[YRI][hapmap] |
| rs11776326 | 0.84[YRI][hapmap] |
| rs11990465 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12674829 | 0.85[YRI][hapmap] |
| rs13254983 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13255263 | 0.89[YRI][hapmap] |
| rs13255327 | 1.00[YRI][hapmap] |
| rs13267958 | 0.85[YRI][hapmap] |
| rs13268663 | 0.89[YRI][hapmap] |
| rs13275132 | 0.85[YRI][hapmap] |
| rs13278429 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13279800 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6473097 | 1.00[YRI][hapmap] |
| rs6473100 | 0.85[YRI][hapmap] |
| rs6473101 | 0.85[YRI][hapmap] |
| rs6995111 | 0.89[YRI][hapmap] |
| rs7013188 | 0.85[YRI][hapmap] |
| rs7818757 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7831707 | 0.87[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017218 | chr8:79287819-79434844 | Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv539652 | chr8:79287819-79434844 | Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033453 | chr8:79320533-79485680 | Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1029401 | chr8:79366260-79427487 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:79396800-79397200 | Weak transcription | Placenta | Placenta |
