Variant report

Variant	rs964413
Chromosome Location	chr13:49226413-49226414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1323556	0.94[ASN][1000 genomes]
rs1359108	0.83[ASN][1000 genomes]
rs1359109	0.83[ASN][1000 genomes]
rs1575464	0.94[ASN][1000 genomes]
rs1575465	0.94[ASN][1000 genomes]
rs2406939	0.89[EUR][1000 genomes]
rs2407093	0.82[AFR][1000 genomes]
rs2407246	0.94[ASN][1000 genomes]
rs2897623	0.94[ASN][1000 genomes]
rs3945837	0.81[ASN][1000 genomes]
rs4942769	0.97[ASN][1000 genomes]
rs6561474	0.85[ASN][1000 genomes]
rs7318887	0.87[ASN][1000 genomes]
rs7323160	0.94[ASN][1000 genomes]
rs7332030	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7336379	0.82[AFR][1000 genomes]
rs7989287	0.83[ASN][1000 genomes]
rs8000783	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535059	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9568059	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9568069	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9595937	0.90[AFR][1000 genomes]
rs9595945	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49222600-49229400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:49222800-49227000	Weak transcription	Fetal Thymus	thymus
3	chr13:49223000-49226600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:49223000-49226600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:49223000-49227200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:49223000-49227200	Weak transcription	Fetal Stomach	stomach
7	chr13:49223000-49227400	Weak transcription	Adipose Nuclei	Adipose
8	chr13:49224800-49226600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr13:49226200-49227000	Enhancers	Dnd41	blood
10	chr13:49226400-49226600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:49226400-49227200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:49226400-49227400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr13:49226400-49227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:49226400-49227800	Enhancers	Primary monocytes fromperipheralblood	blood

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